Re: [PyMOL] selecting atoms ..

2014-02-18 Thread Sampson, Jared
Hi Sampsa - The long list of ids crashes for me as well. Instead of listing each id separately, you can use ranges to define your selections. select paska, id 36-58 select isopaska, id 36-350 If you need to use non-continuous ids, you can use Boolean logic to join the ranges: select isopaska

Re: [PyMOL] selecting atoms around a ligand in a protein structure

2012-07-23 Thread Thomas Holder
Hi Anasuya, "br." is short for "byres" (by residue). So just drop that from your selection expression. select site, (resn FAD and chain A and resi 45) around 4.5 and not HET Cheers, Thomas Anasuya Dighe wrote, On 07/23/12 09:00: > Hi Pymol-users, > > I need to select only the atoms [and NO

RE: [PyMOL] selecting atoms from a mask

2002-03-06 Thread DeLano, Warren
Ricardo, Your suggestion sounds great -- enable creation of atom selections based on map value. Here is a further refinement: select (prot and map1 < 1) select (prot and map1 1 3) select (prot and map1 >= 3) select (prot and map1 = 5) Unfortunately, the code isn't yet written, but it won't tak