Ricardo,

Your suggestion sounds great -- enable creation of atom selections based
on map value.  Here is a further refinement:

select (prot and map1 < 1)
select (prot and map1 1 3)
select (prot and map1 >= 3)

select (prot and map1 = 5)

Unfortunately, the code isn't yet written, but it won't take much
work...

Comments?

- Warren


> -----Original Message-----
> From: Ricardo Aparicio [mailto:apari...@if.sc.usp.br]
> Sent: Wednesday, March 06, 2002 6:16 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] selecting atoms from a mask
> 
> 
> Dear users,
> 
> I would like to select atoms from file.pdb which are - at the 
> same time
> - inside the volume of a map.
> 
> In other words, I would like to make to make a selection like:
> 
> select file.pdb AND map.ccp4
> 
> 
> I would like to know what would be the correct way to do it in PyMOL.
> 
> Many thanks in advance,
> 
> 
> Ricardo Aparicio
> PhD Student
> Brazil
> 
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