Re: [PyMOL] pdb-l: chain alignment tool

2008-07-07 Thread DeLano Scientific
Inside a script, I would suggest adding ",async=0" so that the fetch command is forced to complete before the next command is read: fetch 1a25, async=0 show cartoon create chaina, chain a ... ... -- Subject: Re: [PyMOL] pdb-l: chain alignment tool Hi, There are many. One way is to

Re: [PyMOL] pdb-l: chain alignment tool

2008-07-07 Thread gilleain torrance
Hi, There are many. One way is to use PyMol (or, indeed many other viewers). So I did it like this: fetch 1a25 show cartoon create chaina, chain a create chainb, chain b delete 1a25 align chaina, chainb color red, chain a color blue, chain b I guess that this could be generalised into a script t