Re: [PyMOL] auto_show_cartoon or similar

2016-03-04 Thread Thomas Holder
gt;>> >>>>> Thanks, >>>>> Abhinav >>>>> >>>>> Abhinav Kumar, PhD >>>>> Senior Scientist, Bioinformatics >>>>> Intrexon, Inc. >>>>> 329 Oyster Point Blvd., South San Francisco, CA 94080 >>>>&g

Re: [PyMOL] auto_show_cartoon or similar

2016-02-08 Thread Joel Tyndall
Subject: Re: [PyMOL] auto_show_cartoon or similar Hi Ivan and Carsten, I can take "auto_show_cartoon" as a feature request. It's trivial to implement. What also would be nice: automatically showing sticks for ligands. e.g. corresponding to the "not polymer" or the &quo

Re: [PyMOL] auto_show_cartoon or similar

2016-02-08 Thread Thomas Holder
4072 | aku...@intrexon.com >>> >>> >>> ____________ >>> From: Thomas Holder [thomas.hol...@schrodinger.com] >>> Sent: Monday, February 08, 2016 8:51 AM >>> To: Ivan Vulovic; Schubert, Carsten [JRDUS] >>&g

Re: [PyMOL] auto_show_cartoon or similar

2016-02-08 Thread Bourgaize David
m: Thomas Holder [thomas.hol...@schrodinger.com] >> Sent: Monday, February 08, 2016 8:51 AM >> To: Ivan Vulovic; Schubert, Carsten [JRDUS] >> Cc: pymol-users@lists.sourceforge.net >> Subject: Re: [PyMOL] auto_show_cartoon or similar >> >> Hi Ivan and Carsten,

Re: [PyMOL] auto_show_cartoon or similar

2016-02-08 Thread H. Adam Steinberg
, CA 94080 > (650) 597-4072 | aku...@intrexon.com > > > > From: Thomas Holder [thomas.hol...@schrodinger.com] > Sent: Monday, February 08, 2016 8:51 AM > To: Ivan Vulovic; Schubert, Carsten [JRDUS] > Cc: pymol-users@lists.sourceforge.net > Su

Re: [PyMOL] auto_show_cartoon or similar

2016-02-08 Thread Kumar, Abhinav
From: Thomas Holder [thomas.hol...@schrodinger.com] Sent: Monday, February 08, 2016 8:51 AM To: Ivan Vulovic; Schubert, Carsten [JRDUS] Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] auto_show_cartoon or similar Hi Ivan and Carsten, I can take "auto_show_cartoon" as a featu

Re: [PyMOL] auto_show_cartoon or similar

2016-02-08 Thread Thomas Holder
Hi Ivan and Carsten, I can take "auto_show_cartoon" as a feature request. It's trivial to implement. What also would be nice: automatically showing sticks for ligands. e.g. corresponding to the "not polymer" or the "organic" selection. Thoughts? Cheers, Thomas On 08 Feb 2016, at 09:07, Schub

Re: [PyMOL] auto_show_cartoon or similar

2016-02-08 Thread Schubert, Carsten [JRDUS]
Hi Ivan, you could either try to overload the “load” function in Pymol (not sure this is supported) or write your own custom load function under a different name, which loads the protein, assigns the name of the object, hides lines and shows the cartoon. Sorry, this is a rather generic answer