That would be great, my standard is open file, cartoon, ligand sticks Great idea
-----Original Message----- From: Thomas Holder [mailto:thomas.hol...@schrodinger.com] Sent: Tuesday, 9 February 2016 5:52 AM To: Ivan Vulovic <i...@uw.edu>; Schubert, Carsten [JRDUS] <cschu...@its.jnj.com> Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] auto_show_cartoon or similar Hi Ivan and Carsten, I can take "auto_show_cartoon" as a feature request. It's trivial to implement. What also would be nice: automatically showing sticks for ligands. e.g. corresponding to the "not polymer" or the "organic" selection. Thoughts? Cheers, Thomas On 08 Feb 2016, at 09:07, Schubert, Carsten [JRDUS] <cschu...@its.jnj.com> wrote: > Hi Ivan, > > you could either try to overload the "load" function in Pymol (not sure this > is supported) or write your own custom load function under a different name, > which loads the protein, assigns the name of the object, hides lines and > shows the cartoon. > > Sorry, this is a rather generic answer but should point you in the right > direction. > > Cheers, > > Carsten > > From: Ivan Vulovic [mailto:i...@uw.edu] > Sent: Saturday, February 06, 2016 8:18 PM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] auto_show_cartoon or similar > > Hello > > Is there a way to make cartoon the default representation, something akin to > "auto_show_lines", but for cartoon? There was some dicussion of this in 2010 > (link below) but I haven't found anything more recent that does what I'd like. > > http://www.mail-archive.com/pymol-users%40lists.sourceforge.net/msg07734.html > > Thanks > Ivan -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
