Dear Thomas,
> yum --enablerepo=epel install pymol
Yes, above also worked fine, so 'yumex' is not always needed. Thanks.
I've got received a pymolwiki account by Jason, and will add minimal
and sufficient information, after if cleared graphic driver problem.
Regards,
Masataka
2011/12/8 Thomas
Hi Masataka,
> Thanks for all, I've got installed pymol in CentOS5 from EPEL
> repository. Turning back to the package list by Yum Extender (yumex),
> I found 'pymol' appeared as
> http://lockerz.com/s/162790999
> after
> http://lockerz.com/s/162790733
>
> cf.)
> - Might need installed 'epel*'
>
Hi Masataka,
> Thanks for all, I've got installed pymol in CentOS5 from EPEL
> repository. Turning back to the package list by Yum Extender (yumex),
> I found 'pymol' appeared as
> http://lockerz.com/s/162790999
> after
> http://lockerz.com/s/162790733
>
> cf.)
> - Might need installed 'epel*'
> #
Dear Thomas and all advisers,
Thanks for all, I've got installed pymol in CentOS5 from EPEL
repository. Turning back to the package list by Yum Extender (yumex),
I found 'pymol' appeared as
http://lockerz.com/s/162790999
after
http://lockerz.com/s/162790733
cf.)
- Might need installed 'epel*'
# r
Dear Thomas,
Thanks for good pointing for the weird problem, which I couldn't notice at all.
> You do compile with -D_FORTIFY_SOURCE=2, could you remove that?
I'm afraid, I know not related PyMOL itself, but I wish to know how to
do that. Searching 'setup.py', 'setup2.py' or some 'Makefile*' with
Dear Masataka,
a few months ago, I upgraded most of our computers from RHEL 5.x to 6.1.
If version 6 of CentOS (free RHEL clone) is out, I would highly
recommend, no I would urge you, to upgrade as well. RHEL and CentOS are
rock-solid operating systems, but their libraries and dependencies s
Hi Masataka,
this is really a weird problem. I have none of CentOS, gcc45 or
python2.4 so can't really simulate any of your setup. But from the
message I would say it's related to the C preprocessor rather than the
compiler or python itself. Also, a google search pointed me to this
messages:
Dear Masataka,
Will you try update python 2.4.3 to python 2.6 or later?
Pymol 1.4.1 works well on my centos5.4.
In my case, I both have python 2.7.1 and pytnon 2.4 in the system, and
use python 2.7.1 to compile pymol.
In addition, the gcc version is 4.1.2.
Hope it helps,
Zhijian Xu
grantaka36
the builds on
https://build.opensuse.org/package/show?package=pymol&project=devel%3Alanguages%3Apython
for opensuse 11.3 and 11.4 use gcc4.5 successfully. I blame ubuntu or
linux mint.
-David
On Dec 2, 2011, at 10:21 AM, Marius Retegan wrote:
> Could you please specified what exactly did the
Hi Marius.
The last test I had on a Ubuntu/Mint box (1 month ago), it would not
compile with gcc 4.5.
So, it is necessary to change to gcc 4.4
I have made a script that auto compile on Ubuntu/Mint.
I have not checked the last release with hcc 4.5
I have not tried CentOS.
It would be interesting t
Could you please specified what exactly did the gcc 4.5 broke in Pymol?
Maybe this is not the case for every linux distribution.
Cheers,
Marius
2011/12/2 Troels Emtekær Linnet :
> Try Following this script.
>
> http://www.pymolwiki.org/index.php/Linux_Install#Ubuntu.2FMint_Compile_and_install_wit
Try Following this script.
http://www.pymolwiki.org/index.php/Linux_Install#Ubuntu.2FMint_Compile_and_install_with_MPEG_support
Please report if you are successful.
It would be interesting to see how it works on CentOS
/T
2011/12/2 grantaka36
> Referring the following, I'm trying to install
Hello,
The latest revision 3971 compiles without problems with gcc 4.5.1 on Fedora 14.
I usually install all the dependencies with yum.
My suggestion would be to try compiling with gcc4.5.
Marius
On Fri, Dec 2, 2011 at 8:19 AM, grantaka36 wrote:
> Referring the following, I'm trying to install
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