Dear Masataka, Will you try update python 2.4.3 to python 2.6 or later? Pymol 1.4.1 works well on my centos5.4. In my case, I both have python 2.7.1 and pytnon 2.4 in the system, and use python 2.7.1 to compile pymol. In addition, the gcc version is 4.1.2.
Hope it helps, Zhijian Xu grantaka36 wrote: > Hi, Marius, Troels and David, > > I appreciate very much for guiding, tried in three ways but no success > currently. > > - I also think some difference on distributions (CentOS 5 here,) trapped at > >> function 'IsosurfGetRange' >> > Does anyone have information to workaround? > - Do you think if any dependency on Python version (2.4.3 here)? > > Attached '20111205_script_and_error.zip' is for information sharing: > - 'install_pymol.sh' : followed by below, some package name modified for > CentOS > http://www.pymolwiki.org/index.php/Linux_Install#Ubuntu.2FMint_Compile_and_install_with_MPEG_support > - 'install_pymol_sh_error.txt' > >> layer0/Isosurf.c:2197:1: error: unterminated argument list invoking macro >> "fprintf" >> layer0/Isosurf.c: In function 'IsosurfGetRange': >> > > - 'install_pymol_gcc45.sh' - aiming to use default installed gcc4.5 > instead of 4.4 > - 'install_pymol_gcc45_sh_error.txt' > >> layer0/Isosurf.c: In function 'IsosurfGetRange': >> layer0/Isosurf.c:2197:0: error: unterminated argument list invoking macro >> "fprintf" >> > > - 'compile_pymol.sh' : again by initial trying > http://www.pymolwiki.org/index.php/Linux_Install#Install_from_source > - 'compile_pymol_sh_error.txt' > >> layer0/Isosurf.c: In function 'IsosurfGetRange': >> layer0/Isosurf.c:2197:0: error: unterminated argument list invoking macro >> "fprintf" >> > > > Regards, > Masataka > > > 2011/12/3 David Hall <li...@cowsandmilk.net>: > >> the builds on >> https://build.opensuse.org/package/show?package=pymol&project=devel%3Alanguages%3Apython >> for opensuse 11.3 and 11.4 use gcc4.5 successfully. I blame ubuntu or >> linux mint. >> >> -David >> >> On Dec 2, 2011, at 10:21 AM, Marius Retegan <marius.s.rete...@gmail.com> >> wrote: >> >> >>> Could you please specified what exactly did the gcc 4.5 broke in Pymol? >>> Maybe this is not the case for every linux distribution. >>> >>> Cheers, >>> Marius >>> >>> 2011/12/2 Troels Emtekær Linnet <tlin...@gmail.com>: >>> >>>> Try Following this script. >>>> >>>> http://www.pymolwiki.org/index.php/Linux_Install#Ubuntu.2FMint_Compile_and_install_with_MPEG_support >>>> >>>> Please report if you are successful. >>>> It would be interesting to see how it works on CentOS >>>> >>>> /T >>>> >>>> >>>> >>>> 2011/12/2 grantaka36 <grantak...@gmail.com> >>>> >>>>> Referring the following, I'm trying to install PyMOL 1.4.1 with >>>>> attached 'compile_pymol.sh', but no success. Would you please help to >>>>> finish installation, or give me some advices? If information >>>>> inadequate, please contact me. >>>>> >>>>> http://www.pymolwiki.org/index.php/Linux_Install >>>>> - Requirements >>>>> - Get latest Source from SVN >>>>> - Compile and install >>>>> - Problems - "gcc-4.5 is broken for pymol install, use gcc-4.4" >>>>> -- My distribution has gcc4.5, so installed /usr/bin/gcc44, >>>>> /usr/bin/g++44. >>>>> >>>>> Attached 'install_error.txt' gathers some information: >>>>> - Original module files are in $HOME/install_module/pymol-archive >>>>> - Intends to install in $HOME/pymol-svn >>>>> - Original log has some Japanese messages so I added /* means ... */ >>>>> >>>>> Regards, >>>>> Masataka >>>>> >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> All the data continuously generated in your IT infrastructure >>>>> contains a definitive record of customers, application performance, >>>>> security threats, fraudulent activity, and more. Splunk takes this >>>>> data and makes sense of it. IT sense. And common sense. >>>>> http://p.sf.net/sfu/splunk-novd2d >>>>> _______________________________________________ >>>>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>>>> >>>> >>>> ------------------------------------------------------------------------------ >>>> All the data continuously generated in your IT infrastructure >>>> contains a definitive record of customers, application performance, >>>> security threats, fraudulent activity, and more. Splunk takes this >>>> data and makes sense of it. IT sense. And common sense. >>>> http://p.sf.net/sfu/splunk-novd2d >>>> _______________________________________________ >>>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>>> >>> ------------------------------------------------------------------------------ >>> All the data continuously generated in your IT infrastructure >>> contains a definitive record of customers, application performance, >>> security threats, fraudulent activity, and more. Splunk takes this >>> data and makes sense of it. IT sense. And common sense. >>> http://p.sf.net/sfu/splunk-novd2d >>> _______________________________________________ >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>> >>> ------------------------------------------------------------------------ >>> >>> ------------------------------------------------------------------------------ >>> All the data continuously generated in your IT infrastructure >>> contains a definitive record of customers, application performance, >>> security threats, fraudulent activity, and more. Splunk takes this >>> data and makes sense of it. IT sense. And common sense. >>> http://p.sf.net/sfu/splunk-novd2d >>> ------------------------------------------------------------------------ >>> >>> _______________________________________________ >>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ All the data continuously generated in your IT infrastructure contains a definitive record of customers, application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-novd2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
