Thank you Tamas, for suggesting that great MDanalysis tool, will try it
out!
Thank you Rob, yes that command worked (phi_psi obj), it gave a list of all
backbone dihedral angles!
On Sat, 9 May 2020 at 12:45, Tamas Hegedus wrote:
> Hi,
>
> For this type of analysis I would use MDAnalysis (Python
Hi Neena,
If you give a different selection, then phi_psi will give you a list of phi/psi
angles for all residues in the selection.
For example if your protein object is called "obj_1", then typing
phi_psi obj_1
will provide a list of phi_psi values to the terminal:
PyMOL>phi_psi obj_1
LYS-3
Hi,
For this type of analysis I would use MDAnalysis (Python):
https://www.mdanalysis.org/
https://www.mdanalysis.org/mdanalysis/documentation_pages/analysis/dihedrals.html
Tamas
On 5/9/20 5:08 PM, Neena Susan Eappen wrote:
Hi Jarrett,
Thank you for your reply. However, that command gives phi
Hi Jarrett,
Thank you for your reply. However, that command gives phi and psi angles
for only one atom (when only one atom is selected). Is there one command we
can use to extract all phi and psi angles?
Thanks,
Neena
On Mon, 27 Apr 2020 at 22:01, Jarrett Johnson <
jarrett.john...@schrodinger.
Hi Neena,
Is this command sufficient?
https://pymol.org/dokuwiki/doku.php?id=command:phi_psi
Best,
Jarrett J
On Mon, Apr 27, 2020 at 9:45 PM Neena Susan Eappen
wrote:
> Hello PyMOL users,
>
> How to extract all peptide dihedral angles (phi and psi) in PyMOL?
>
> Many thanks,
> Neena
> ___
