Thank you Blaine!
Now I know why, and how to manually fix this.
> On Mar 20, 2020, at 10:52 PM, Mooers, Blaine H.M. (HSC)
> wrote:
>
> The O3' to P bond lengths are 2.2 Angstroms when they should 1.6 Angstroms.
> This is outside the bond length range that PyMOL accepts so the bond is
> absent
The O3' to P bond lengths are 2.2 Angstroms when they should 1.6 Angstroms.
This is outside the bond length range that PyMOL accepts so the bond is absent
when you display the model as line or stick model.
This is why the cartoon is missing or broken.
5FUR is a 8.5 Angstrom cryo EM structure.
Perh