Re: [PyMOL] Mix pml script and PDB file

2005-07-19 Thread Sebastien Moretti
Sebastien, Yes, you can do with with a "p1m" file, which is like a "pml" file, but data can be included as well. Also note that p1m files are intended for web publishing, so embedded Python is disallowed. In p1m files, there is an "embed" command that enables this for PDB, MOL, MOL2, SDF, an

RE: [PyMOL] Mix pml script and PDB file

2005-07-18 Thread tanrikul
Hi, web publishing? Sounds like a nice feature... are there any documentations about that? regards Yusuf Quoting Warren DeLano : Sebastien, Yes, you can do with with a "p1m" file, which is like a "pml" file, but data can be included as well. Also note that p1m files are intended for web p

RE: [PyMOL] Mix pml script and PDB file

2005-07-18 Thread Warren DeLano
Sebastien, Yes, you can do with with a "p1m" file, which is like a "pml" file, but data can be included as well. Also note that p1m files are intended for web publishing, so embedded Python is disallowed. In p1m files, there is an "embed" command that enables this for PDB, MOL, MOL2, SDF, and

Re: [PyMOL] Mix pml script and PDB file

2005-07-18 Thread Michael George Lerner
On Mon, 18 Jul 2005, Sebastien Moretti wrote: Hello, Is there a way to get one file with pymol commands (pml script) and with the structure (PDB file) ? I can get this with Rasmol and the ras script file. Can I get the same kind of file with PyMOL ? You can use the read_pdbstr command, li