Sebastien, Yes, you can do with with a "p1m" file, which is like a "pml" file, but data can be included as well. Also note that p1m files are intended for web publishing, so embedded Python is disallowed. In p1m files, there is an "embed" command that enables this for PDB, MOL, MOL2, SDF, and XPLOR data. It works like this:
embed tag, format ****REPLACE THIS LINE WITH YOUR DATA FILE**** embed end load_embedded tag where tag is some identifier of your choice. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Sebastien Moretti > Sent: Monday, July 18, 2005 5:03 AM > To: pymol-users > Subject: [PyMOL] Mix pml script and PDB file > > Hello, > Is there a way to get one file with pymol commands (pml > script) and with the structure (PDB file) ? > > I can get this with Rasmol and the ras script file. > Can I get the same kind of file with PyMOL ? > > Thanks > > -- > Sébastien Moretti > http://www.igs.cnrs-mrs.fr/ > CNRS - IGS > 31 chemin Joseph Aiguier > 13402 Marseille cedex > > > ------------------------------------------------------- > SF.Net email is sponsored by: Discover Easy Linux Migration Strategies > from IBM. Find simple to follow Roadmaps, straightforward articles, > informative Webcasts and more! Get everything you need to get up to > speed, fast. http://ads.osdn.com/?ad_idt77&alloc_id492&op=ick > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > >
