Hi As,
You can start with this:
select my_ligands, organic
and if that gives you other unwanted molecules (buffers, ions, etc), you can
try to narrow the selection by chain, residue name/number, etc.:
select my_ligands, organic and chain B and resn ATP+ADP+AMP
Hope that helps.
Cheer
Dear all
While aligning proteins in pymol, I want to zoom in the superimposed
ligands only. How can I only select ligands in the pymol so that I could
zoom those and take a screenshot?
Thanks in anticipation
As
--
Check ou
Thanks all. I will try these and update you.
Thanks a lot.
On Tue, Jul 3, 2018 at 9:29 AM, Jason Key wrote:
> Hi Adarsh,
>
> On Mon, Jul 2, 2018 at 8:39 PM, ADARSH BALA
> wrote:
> > I have 8 proteins and superposed these proteins to see the similarity in
> > the binding ligand using pymol (By
Hi Adarsh,
On Mon, Jul 2, 2018 at 8:39 PM, ADARSH BALA wrote:
> I have 8 proteins and superposed these proteins to see the similarity in
> the binding ligand using pymol (By aligning), but I want to present these
> multiple proteins one by one. Can I show superposed multiple ligands one by
> one
Dear Adarsh,
If you create selection, you will be able to toggle them on and off with a
single click (switching between ligands would take two clicks). If you
really need "one click" solution you might want to investigate writing a
script for pymol.
One non-pymolic way to create a video is to sav
Dear Pymol users,
I have 8 proteins and superposed these proteins to see the similarity in
the binding ligand using pymol (By aligning), but I want to present these
multiple proteins one by one. Can I show superposed multiple ligands one by
one by clicking and all the proteins in one screen?
I wa
