Hi As, 

You can start with this:

    select my_ligands, organic

and if that gives you other unwanted molecules (buffers, ions, etc), you can 
try to narrow the selection by chain, residue name/number, etc.:

    select my_ligands, organic and chain B and resn ATP+ADP+AMP

Hope that helps.

Cheers,
Jared


On July 16, 2018 at 8:17:16 PM, ADARSH BALA (adarsh1966b...@gmail.com) wrote:

Dear all
While aligning proteins in pymol, I want to zoom in the superimposed ligands 
only. How can I only select ligands in the pymol so that I could zoom those and 
take a screenshot?

Thanks in anticipation
As
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