Re: [PyMOL] surfaces for molecules with non-standard VDW's

2007-05-22 Thread Richard Gillilan
Thanks! That works. In the past I had actually wanted to set solvent radius fairly large, but had poor luck getting the results I wanted. Now it seems to solve this particular problem. Go figure. Richard On May 22, 2007, at 10:53 AM, Tsjerk Wassenaar wrote: Hi Richard, What about set

Re: [PyMOL] surfaces for molecules with non-standard VDW's

2007-05-22 Thread Tsjerk Wassenaar
Hi Richard, What about set solvent_radius,3 That seems to do the trick for me. Cheers, Tsjerk On 5/22/07, Richard Gillilan wrote: In the past I have used PyMol pretty successfully to visualize low- resolution x-ray solution scattering results in which each "atom" in a pdb file is actually

[PyMOL] surfaces for molecules with non-standard VDW's

2007-05-22 Thread Richard Gillilan
In the past I have used PyMol pretty successfully to visualize low- resolution x-ray solution scattering results in which each "atom" in a pdb file is actually a large sphere (say 4-6 Angstroms) representing some density. I would use >alter , vdw = 6.0 to set the sphere sizes appropriate