Hi Richard, What about
set solvent_radius,3 That seems to do the trick for me. Cheers, Tsjerk On 5/22/07, Richard Gillilan <r...@cornell.edu> wrote:
In the past I have used PyMol pretty successfully to visualize low- resolution x-ray solution scattering results in which each "atom" in a pdb file is actually a large sphere (say 4-6 Angstroms) representing some density. I would use >alter <molecule name>, vdw = 6.0 to set the sphere sizes appropriately, then compute a surface using the "surface" option in the "Show" pulldown of the appropriate object. Strangely, this seems to have quit working for me. When I select surface, nothing happens, not even an error message. It still works fine for older files I have, so it must be something particular about the geometry of the object I have (it is a rather sparse extended object). Anyone seen this kind of problem? File is included below: ------------------------------------------------------------------------- This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
-- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623
