Re: [PyMOL] side chain helper glycine

2014-06-23 Thread Thomas Holder
Hi Christian, cartoon_side_chain_helper was implemented as an atom-level-setting in the latest Incentive PyMOL version. In older versions and in the current open-source, the setting is object-level. However, if you create a separate object like you said, it should work with these versions too.

Re: [PyMOL] side chain helper glycine

2014-06-23 Thread Andreas Warnecke
Hej, I'm not sure about the side chain helper options, but you can always selectively show displays. You could try something like: show_as cartoon, object show sticks, sele and not name N+C+O or: show_as cartoon, object show sticks, sele hide sticks, name N+C+O Either option should show the ca

[PyMOL] side chain helper glycine

2014-06-23 Thread Christian Roth
Hi there, I used the side chain helper option to create a binding site in the protein. However I want include a glycine, which doesn't show up. Even when I create an extra object with the glycine and an neighbouring residue I didn't get the carbonyl oxygen atom of glycine and I don't want to s