Hi Christian, cartoon_side_chain_helper was implemented as an atom-level-setting in the latest Incentive PyMOL version. In older versions and in the current open-source, the setting is object-level. However, if you create a separate object like you said, it should work with these versions too. Just make sure you hide cartoon or unset the cartoon_side_chain_helper setting for that new object. Example:
PyMOL> fetch 1ubq, async=0 PyMOL> as cartoon PyMOL> show sticks PyMOL> set cartoon_side_chain_helper PyMOL> create mygly, resi 35 PyMOL> as sticks, mygly PyMOL> orient mygly Cheers, Thomas On 23 Jun 2014, at 14:13, Christian Roth <christian.r...@bbz.uni-leipzig.de> wrote: > Hi there, > > I used the side chain helper option to create a binding site in the > protein. However I want include a glycine, which doesn't show up. Even > when I create an extra object with the glycine and an neighbouring > residue I didn't get the carbonyl oxygen atom of glycine and I don't > want to switch of the side chain helper function for all residues. > Is there a way to get that done without switching the helper function > completely off? > > Thanks in advance for your help > > Christian -- Thomas Holder PyMOL Developer Schrödinger, Inc. ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
