Hi Yunfeng Hu,
You can try the following (which has surely been on the list before :) ):
show sticks, (byres ((protA within 3.5 of protB) or (protB within 3.5 of
protA)))
You might want to make sure that you only have hydrogen bonds by adding
additional terms.
Hope it helps. Cheers,
Tsjer
Hi Yunfeng,
I ran across the following link in the archives that might get you started.
http://sourceforge.net/mailarchive/message.php?msg_id=6905613
Best,
Morri
On Wed, 28 Jan 2004, Yunfeng Hu wrote:
> Hi, I have the following task to do and wonder if anyone can show a simple
> way to do it.
Hi, I have the following task to do and wonder if anyone can show a simple
way to do it. I want to show the residues forming intermolecular hydrogen
bonds between two proteins.
dist protein A, protein B, 3.5
Then I want to show those residues that form hydrogen bonds with each
other. How do I
