Re: [PyMOL] regarding show_bumps

Dear Thomas Thank you very much!! Best Regards Priyan On Fri, Jan 29, 2016 at 5:13 AM, Thomas Holder < thomas.hol...@schrodinger.com> wrote: > Hi Spencer & Priyan, > > I've updated the show_bumps script to work with multi-state objects. > Please re-download. > > Cheers, > Thomas > > On 28 Jan

Re: [PyMOL] regarding show_bumps

Hi Spencer & Priyan, I've updated the show_bumps script to work with multi-state objects. Please re-download. Cheers, Thomas On 28 Jan 2016, at 06:15, Spencer Bliven wrote: > You can automate generating the bump objects: > > split_states *,prefix=split_ > for n in cmd.get_object_list("(spl

Re: [PyMOL] regarding show_bumps

You can automate generating the bump objects: split_states *,prefix=split_ for n in cmd.get_object_list("(split_*)"): show_bumps(n, "bump_"+n); However, unfortunately the bump cgo objects don't seem to be able to be combined into a multi-state object (e.g. with `for n in cmd.get_object_list("(spl

Re: [PyMOL] regarding show_bumps

Dear Spencer Thank you for the suggestion. Well, I actually wanted to do it as a part of making a movie, so would have liked some automation. Thank you. Best Regards Priyan On Thu, Jan 28, 2016 at 2:39 PM, Spencer Bliven wrote: > Priyan– > > You can use the split_states

Re: [PyMOL] regarding show_bumps

Priyan– You can use the split_states command to divide it into multiple objects, then run the script on each state individually. -Spencer On Thu, Jan 28, 2016 at 3:45 AM, ccp4 pymol wrote: > Hi > > I have a multi-state object loaded in PyMOL which

[PyMOL] regarding show_bumps

Hi I have a multi-state object loaded in PyMOL which represents transition of a domain from one orientation to the other. I tried using "show_bumps.py" to bring up clashes during the transition but the cgo that is written out shows clashes only for the first state. Am I doing something wrong or sh