Hi Spencer & Priyan,
I've updated the show_bumps script to work with multi-state objects. Please
re-download.
Cheers,
Thomas
On 28 Jan 2016, at 06:15, Spencer Bliven <spencer.bli...@gmail.com> wrote:
> You can automate generating the bump objects:
>
> split_states *,prefix=split_
> for n in cmd.get_object_list("(split_*)"): show_bumps(n, "bump_"+n);
>
> However, unfortunately the bump cgo objects don't seem to be able to be
> combined into a multi-state object (e.g. with `for n in
> cmd.get_object_list("(split_*)"):
> cmd.create("bumps","bump_"+n,target_state=-1)`). Thus you might have to
> generate your movie using some python loops to enable/disable the bumps for
> each frame, if you want to automate it.
>
> -Spencer
>
> On Thu, Jan 28, 2016 at 11:25 AM, ccp4 pymol <ccp4.py...@gmail.com> wrote:
> Dear Spencer
>
> Thank you for the suggestion. Well, I actually wanted to do it as a part of
> making a movie, so would have liked some automation.
>
> Thank you.
>
> Best Regards
> Priyan
>
> On Thu, Jan 28, 2016 at 2:39 PM, Spencer Bliven <spencer.bli...@gmail.com>
> wrote:
> Priyan–
>
> You can use the split_states command to divide it into multiple objects, then
> run the script on each state individually.
>
> -Spencer
>
> On Thu, Jan 28, 2016 at 3:45 AM, ccp4 pymol <ccp4.py...@gmail.com> wrote:
> Hi
>
> I have a multi-state object loaded in PyMOL which represents transition of a
> domain from one orientation to the other. I tried using "show_bumps.py" to
> bring up clashes during the transition but the cgo that is written out shows
> clashes only for the first state. Am I doing something wrong or should we
> pass additional commands to show clashes for all states. Kindly post your
> replies with help/suggestions in this regard.
>
> Thank you
>
> Best Regards
> Priyan
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
------------------------------------------------------------------------------
Site24x7 APM Insight: Get Deep Visibility into Application Performance
APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month
Monitor end-to-end web transactions and take corrective actions now
Troubleshoot faster and improve end-user experience. Signup Now!
http://pubads.g.doubleclick.net/gampad/clk?id=267308311&iu=/4140
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
