So I've tryed to use cmd.refresh() and it has worked!
So your script must include the following:
cmd.load
cmd.refresh
[some actions]
cmd.load
cmd.refresh
[some actions]
etc.
2011/9/14 Matthias Schmidt :
> Hi, not quite the script does the following:
>
> 1: load a file
> 2: modifiy this file using
So what exactly do you want your script to do?
1. Show loaded file
2. Modify file
3. Show modified file
Is it right?
2011/9/14 Matthias Schmidt :
> Hi,
>
> This approach does not work, because file.pdb is written in "do something..."
>
> Also, if I say "spawn script.py gloabl" instead of "run scr
Try to do the following:
in your script.py
from pymol import cmd
cmd.load("file.pdb")
def script():
do something...
cmd.extend("script", script)
In this case your pdb will be loaded before the script completes.
2011/9/14 Thomas Holder :
> Hi Matthias,
>
> use "spawn" instead of "run".
>
> htt
Hi Matthias,
use "spawn" instead of "run".
http://pymolwiki.org/index.php/Fork
Cheers,
Thomas
On 09/14/2011 02:30 PM, Matthias Schmidt wrote:
> Hi,
>
> I am loading a pdb file in a python script for pymol.
>
> The script has the following structure:
>
> def script
> do something
> cmd.load("
Hi,
I am loading a pdb file in a python script for pymol.
The script has the following structure:
def script
do something
cmd.load("file.pdb")
do lot more
cmd.extend("script", script)
When the python script is completed, the molecule file.pdb is shown
in the openGL display, but not before. Ho
