Try to do the following:
in your script.py
from pymol import cmd
cmd.load("file.pdb")
def script():
do something...
cmd.extend("script", script)
In this case your pdb will be loaded before the script completes.
2011/9/14 Thomas Holder <spel...@users.sourceforge.net>:
> Hi Matthias,
>
> use "spawn" instead of "run".
>
> http://pymolwiki.org/index.php/Fork
>
> Cheers,
> Thomas
>
> On 09/14/2011 02:30 PM, Matthias Schmidt wrote:
>> Hi,
>>
>> I am loading a pdb file in a python script for pymol.
>>
>> The script has the following structure:
>>
>> def script
>> do something
>> cmd.load("file.pdb")
>> do lot more
>> cmd.extend("script", script)
>>
>> When the python script is completed, the molecule file.pdb is shown
>> in the openGL display, but not before. How can I show the molecule
>> file.pdb in the display immediately after loading it and before "do
>> lot more" is executed?
>>
>> Best,
>>
>> Matthias
>> --
>> Structural Bioinformatics and Computational Biochemistry Unit
>> Dept. of Biochemistry
>> University of Oxford
>>
>> http://sbcb.bioch.ox.ac.uk/schmidt.php
>
> --
> Thomas Holder
> MPI for Developmental Biology
>
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--
Андрей Гончар
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