Re: [PyMOL] maps and volumes -- transforming to match molecule

2016-02-19 Thread Thomas Holder
Hi Connor, The matrix_copy command should work fine with maps. Which version of PyMOL are you using? Try to follow this example: fetch 1ubq 5dtc, async=0 fetch 1ubq 5dtc, async=0, type=2fofc align 1ubq, 5dtc matrix_copy 1ubq, 1ubq_2fofc volume vol, 1ubq_2fofc Cheers, Thomas On 17 Feb 2016, a

[PyMOL] maps and volumes -- transforming to match molecule

2016-02-19 Thread McGrath, Connor (NIH/NCI) [C]
Hello folks: I have loaded a series of small molecules and have loaded maps of quantum properties from another source. I want to align the molecules to a "base" scaffold, which I can do. What I am having difficulty with is the subsequent Rotation/translation of the map object for given molecule.