Hi Connor, The matrix_copy command should work fine with maps. Which version of PyMOL are you using? Try to follow this example:
fetch 1ubq 5dtc, async=0 fetch 1ubq 5dtc, async=0, type=2fofc align 1ubq, 5dtc matrix_copy 1ubq, 1ubq_2fofc volume vol, 1ubq_2fofc Cheers, Thomas On 17 Feb 2016, at 16:38, McGrath, Connor (NIH/NCI) [C] <mcgrathcon...@mail.nih.gov> wrote: > Hello folks: > > I have loaded a series of small molecules and have loaded maps of quantum > properties from another source. > I want to align the molecules to a “base” scaffold, which I can do. What I am > having difficulty with is the subsequent > Rotation/translation of the map object for given molecule. The matrix_copy > approach does not appear to have any effect, > although it does not generate an error. > Someone must have come across this problem. I have seen requests similar to > mine as far back as 2004, but no resolution that I can find. > > Of course, any help would be greatly appreciated > > Connor F. McGrath, Ph.D. > > Manager, Computational Drug Development Group > > Frederick National Laboratory for Cancer Research > > CDDG, DTP, DCTD (Leidos Biomedical contract) > > mcgrathcon...@mail.nih.gov -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=272487151&iu=/4140 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
