Hi Yanni,
What's your Python version? You need at least Python 3.6.
If you don't have Python 3.6 available, you can try the legacy Python 2 branch:
https://github.com/schrodinger/pymol-open-source/tree/py2
Cheers,
Thomas
> On Oct 6, 2020, at 2:53 PM, Yanni G wrote:
>
> Hello everyone
>
> I
Hi Yanni,
If you have root access (su), it might be easier to try "Open-Source PyMOL
in Linux Distros" (
https://pymolwiki.org/index.php/Linux_Install#Open-Source_PyMOL_in_Linux_Distros).
This approach saves the process of compiling the code manually.
Best,
Y. Tao
Yanni G 于2020年10月7日周三 上午5:21写
Hello everyone
I'm having difficulty installing pymol on my Centos7 machine. I have
followed the instructions on the Pymol wiki page but when I try to
build+install, I get this error:
python3 setup.py build install --home=/opt/pymol-osbuild
File "setup.py", line 227
out.write(f'set PYMOL_
Hi, Thomas. Yeah, solution no. 1 worked! Thank you very much indeed.
Kind regards,
Antonio
--
"Este mensaje es privado y confidencial y se dirige exclusivamente a su
destinatario. Si usted recibe este mensaje por error, no debe revelar,
distribuir o copiar este e-mail. Por favor, comuníquelo
Hi Antonio,
Thanks for the diagnostics data.
> I'm working with a virtual environment.
Ah, that's the crux. I assume you've used something like `python3 -m venv
--system-site-packages`. That happens to be not compatible with how PyMOL finds
$PYMOL_PATH, it uses `sys.prefix` for that which now
This is the diagnostics log. Please keep reading at the end of the log:
PyMOL(TM) 2.3.4 - Incentive Product
Copyright (C) Schrodinger, LLC
This Executable Build integrates and extends Open-Source P
That's unexpected. Can you send the output of the following command?
pymol -cd diagnostics
This will report the exact installation location, and also if a license file
was found.
> On Jun 19, 2020, at 10:33 AM, Antonio Serrano wrote:
>
> I changed the name of the license file as you said, bu
I changed the name of the license file as you said, but the warning message
keeps popping:
[image: current_pos.png]
El jue., 18 jun. 2020 a las 20:16, Thomas Holder (<
thomas.hol...@schrodinger.com>) escribió:
> Hi Antonio,
>
> Rename the file to "license.lic".
>
> Cheers,
> Thomas
>
> >
Hi Antonio,
Rename the file to "license.lic".
Cheers,
Thomas
> On Jun 18, 2020, at 6:08 PM, Antonio Serrano wrote:
>
> Hi Thomas. Thanks for your quick response. I installed Miniconda, so I put
> the license file (pymol-edu-license.lic) in the following path:
> $HOME/miniconda3/share/pymo
Hi Thomas. Thanks for your quick response. I installed Miniconda, so I put
the license file (pymol-edu-license.lic) in the following path:
$HOME/miniconda3/share/pymol/ . But a warning text stating "No License File
- For evaluation Only (0 days remaining)" still appears when rendering PNG
files wit
Hi Antonio,
Did you install PyMOL into $HOME/anaconda3 ? If you installed into a different
location, then that path to the license file will differ of course. Basically,
path-to-pymol-dir/share/pymol/license.lic is the path.
Cheers,
Thomas
> On Jun 17, 2020, at 2:15 PM, Antonio Serrano wrot
Hi:
I'm working with PyMol installed on a remote server, so I don't have access
to the GUI. I already have an educational license. According to your FAQ at
https://pymol.org/2/support.html?, the license file should be placed
in $HOME/anaconda3/share/pymol/license.lic
on a Linux computer. I already
Got it, thanks!
On Fri, Sep 14, 2018 at 11:51 AM Thomas Holder <
thomas.hol...@schrodinger.com> wrote:
> Hi Puneet,
>
> Incentive PyMOL installation instructions:
> https://pymol.org/support#installation
>
> Open-Source PyMOL installation instructions:
> https://pymolwiki.org/index.php/Linux_Inst
Hi Puneet,
Incentive PyMOL installation instructions:
https://pymol.org/support#installation
Open-Source PyMOL installation instructions:
https://pymolwiki.org/index.php/Linux_Install
Cheers,
Thomas
> On Sep 14, 2018, at 7:08 AM, puneet garg wrote:
>
> Hi,
> Can anyone send me instructions
Hi,
Can anyone send me instructions on how to install PyMOL on CentOS 7
Thanks
--
Puneet
___
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archiv
Hi,
I also had some problem with this. The "trick", I believe, is to
compile/install pymol with:
python2.7 setup.py build install --home=path_to_pymol/
--install-lib=path_to_pymol/modules/ --install-scripts=path_to_pymol/
The part you are interested in is the modules. I needed to instal
Hi all,
I have been trying for a while, but cannot seem to figure out how to install
pymol on my unix server so that I can run pymol from within a python script.
(So that I can use it with the command ' import pymol'. I did manage to do
this on my windows with a wheel, but don't know how to sol
Dear all,
I am trying to install pymol on my centos 6 system from source following the
guide on the pymolwiki ("https://pymolwiki.org/index.php/Linux_Install)". The
installation process seemed to be successful but when I initialized pymol, I
got the following error:
import _tkinter # If this f
Hi,
I'm trying to install PyMOL-v1.5.0.4-Linux-x86_64 on Linux Mint 13.
After successful unpacking, "sh"-ing and copying into /usr/local/bin/pymol
I tried to execute Pymol from the terminal, but error came out:
vitali@vs-Think ~/install/pymol $ pymol
/home/vitali/install/pymol/pymol.exe: 1:
/hom
Hi Yeping,
Check out
http://www.pymolwiki.org/index.php/Linux_Install#Compile_and_install.
Cheers,
-- Jason
On Mon, Mar 4, 2013 at 8:17 PM, yp sun wrote:
> Dear pymol users,
>
> I try to install pymol in Linux system as following
>
> (1) download pymol-v1.5.0.1.tar.bz2 and decompress it to /
Dear pymol users,
I try to install pymol in Linux system as following
(1) download pymol-v1.5.0.1.tar.bz2 and decompress it to /opt directory.
(2) go into /opt/pymol/setup directiry and enter the command "setup.sh"
Then I see the install success information:
Thanks Camilo! You're absolutely right that it needs python and TK with
those options. Sorry that I forgot that. That being said, it should not
have installed pymol without those packages. I suggest you run brew
updatebefore installing. Also, if you run brew
install tk --enable-threads it should au
Hi all
This option to install pymol is great!. However, I tried to install it in
my 10.8.2 with xquartz intalled and it was crashing.
For it to run well, you need to enable threads, do:
brew uninstall tcl
brew uninstall tk
brew uninstall python
brew install tk --enable-threads
brew install tcl
, 26 March 2012 5:52 a.m.
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] where does PyMOL install to on Windows?
I'm trying to figure out how to launch PyMOL automatically from a script on
Windows. I'm stuck with the 0.99 build for now, where the .exe is
C:\Program Files\DeLano
I'm trying to figure out how to launch PyMOL automatically from a
script on Windows. I'm stuck with the 0.99 build for now, where the
.exe is
C:\Program Files\DeLano Scientifc\PyMOL\PyMOL.exe
Is this now
C:\Program Files\Schrodinger\PyMOL\PyMOL.exe
in the newer versions, or somewhere else?
th
Thanks Hugo, I am going to try it.
Muchas gracias,
Saludos
De: Hugo Gutierrez de Teran [hugo.te...@usc.es]
Enviado el: martes, 06 de julio de 2010 15:55
Para: José Ignacio Sánchez Gallego
CC: pymol-users@lists.sourceforge.net
Asunto: Re: [PyMOL] Install the
Ignacio,
Go to the README and INSTALL files within the tar (which you must
uncompress of course) to follow compilation instrucions.
More information in:
http://pymolwiki.org/index.php/Category:Installation
Deppending on the platform that you are running (linux(mac/windows).
Suerte,
Hugo
José I
Hi!!
I am very new in this stuff, and my first problem it's how to install the
software. I want to use it online. I go to the main page http://www.pymol.org/
and then to · OPEN SOURCE CODE (SVN), then I download the GNU tarball, but
then I don't know how to install it or what I have to do to st
Indeed, freeglut-devel was missing, and indeed it was a problem that I
had encountered before. But you forget things if you don't do them for
a living...
Andreas
Marius Retegan wrote:
Hello
I think you need to install development version for freeglut. At least
that was the problem in my c
Sorry for a question that I feel has been answered a hundred times, but
I can't seem to find a solution anywhere.
I try to install PyMOL via svn on a Redhat EL5 system as described in
the wiki:
svn co https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol pymol
cd pymol
python setup.py i
://delsci.com/ip/11
Cheers,
Warren
_
From: pymol-users-boun...@lists.sourceforge.net
[mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Joel Tyndall
Sent: Tuesday, September 16, 2008 3:11 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] install/upgrade
Hi folks
Hi folks,
Just updated my pymol version to 1.1 on my linux boxes and I get an error
"floating point".
I am running centos 4.6 32 bit...any suggestions? I've got nothing. 1.0r2 works
fine.
J
_
Joel Tyndall, PhD
Senior Lecturer in Medicinal Chemistry
National S
Many thanks to Rob Campbell for, well, not giving the solution to my
problem, but pointing me into the right direction and making me keep
digging...
Robert Campbell wrote:
Hello Andreas,
Yes you need the Mesa development files and yes there is a conflict
between FireGL and Mesa.
I use Debian
On Wed, Aug 31, 2005 at 09:37:05PM +0200, Andreas Förster wrote:
> Hey all,
>
> sorry for taking to the list what seems to me a trivial problem. But I
> can't get over it and I'm afraid to modified my system too much since I
> don't know what I'm doing.
>
> Basically, what I've done is downloa
Hey all,
sorry for taking to the list what seems to me a trivial problem. But I
can't get over it and I'm afraid to modified my system too much since I
don't know what I'm doing.
Basically, what I've done is download the pymol sources
(pymol-0_98-src.tgz) from delsci.com. I made sure I've
Hi, I'm having a strange problem. I'm trying to install pymol 0.90 on a
new computer (Windows XP Home Edition). So far everytime I try to run
pymol, a window will pop-up briefly telling me that if pymol doesn't start
up immediately, to hit ENTER. If I'm quick enough to hit enter or not,
e
On Thu, 5 Jun 2003, Kelley Moremen wrote:
> I am having problems getting access to the updated (0.88) version of Pymol
> from Fink. After updating Fink and Pymol, my Fink still seems to think that
> the 0.86 version is the most up-to-date version. Am I missing something?
Pymol 0.88 is only in t
Dear Warren,
I am having problems getting access to the updated (0.88) version of Pymol
from Fink. After updating Fink and Pymol, my Fink still seems to think that
the 0.86 version is the most up-to-date version. Am I missing something?
Any by the way is there any timeframe in getting a GUI int
Hello there,
I am trying to install pymol under red hat 7.2 using
the rpm file and I have the message:
'libGLcore.so.1 is needed by
pymol-0.78-3.rh72.py21n'
this library it is in /usr/lib, so what's wrong?
Hugo
__
Do You Yahoo!?
Yahoo! Movies - co
I think ir you install Python 2.1 or you wait Pymol compiled to Python
2.2.
On Thu, 7 Mar 2002, Fei Xu wrote:
> Hi! Everyone:
> I am installing pymol.My versioin is 0.78 for window. I use python2.2.
> When I run pymol , it saiys that it can't find python21.dll.
> what should I do? does it requir
Hi! Everyone:
I am installing pymol.My versioin is 0.78 for window. I use python2.2.
When I run pymol , it saiys that it can't find python21.dll.
what should I do? does it require python21.dll absolutely?
HAve a nice day!
Fei Xu
Hi All,
I have Python 2.1 installed on a Win 95 box, and have completed
installation
of pymol-0_68-bin-win32-py21, but when I try to run it I get this error
message:
Error Starting Program
The PYMOL.EXE file is linked to missing export
GLU32.DLL:glu:gluTessProperty
Does anyone have any ideas?
42 matches
Mail list logo
