Hi Sangita,
This is trickier than it should be in PyMOL. The problem lies in the
fact that when you cut one residue it makes two chemically separate
entities that are stored internally as one object--so PyMOL tries to
re-connect the bonds. One trick, that sometimes works is:
set connect_mode, 2
Hello all
I have to cut phosphodiester bond in DNA.I am able to cut it by selecting pk1
and pk2 and then deleting the bond. But I am not able to save the coordinate.
When I am saving by "save molecule" and aging loading the saved molecule
original molecule(Uncut DNA) is loaded.
Can anybody sugg
