Re: [PyMOL] cartoon from c-alphas JMol vs PyMol

2012-05-18 Thread Jason Vertrees
Hi Adam, set cartoon_trace_atoms set cartoon_throw, 1 If you want secondary structures, then you'll need to assign them using the 'alter' command. Cheers, -- Jason On Fri, May 18, 2012 at 5:13 PM, H. Adam Steinberg wrote: > Hi all, > > If you open a c-alpha pdb (3ixz for example) in PyMol, y

[PyMOL] cartoon from c-alphas JMol vs PyMol

2012-05-18 Thread H. Adam Steinberg
Hi all, If you open a c-alpha pdb (3ixz for example) in PyMol, you can show the c-alphas as spheres, or you can show a cartoon as a tube (ribbon like) but you can make a traditional flat faced PyMol cartoon. Yet when you open the same pdb in JMol it shows the traditional PyMol cartoon as the de