Re: [PyMOL] Single transparent sphere

2007-04-09 Thread Michael Lerner
; transparency = float(transparency) data = dock_file_to_data(filename) graph_temp_via_cgo('dock_spheres',data,transparency) cmd.extend('sds',show_dock_spheres) On 4/6/07, DeLano Scientific wrote: Pre 1.0: fragment methane, mysph remove hydro and mysph alter mysph, vdw=2.0 a

Re: [PyMOL] Single transparent sphere

2007-04-06 Thread DeLano Scientific
...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of jjv5 Sent: Friday, April 06, 2007 4:55 AM To: PyMOL-users@lists.sourceforge.net Subject: [PyMOL] Single transparent sphere Hi, Does anyone know of a good way to create a single transparent sphere of varying size? We&#x

[PyMOL] Single transparent sphere

2007-04-06 Thread jjv5
Hi, Does anyone know of a good way to create a single transparent sphere of varying size? We've tried using a single atom and changing the vdw, but we are unable to produce a surface of a single atom. CGO objects work but cannot be made transparent. What we'd really like is a transparent CGO sphe