Re: [PyMOL] Rebuild/install of pymol after svn up ?

2012-01-13 Thread Troels Emtekær Linnet
Hi Thomas. Thanks! And right now I am looking at my "big install script". It is a mess, and I am cleaning it up. The problem with gcc is not an issue anymore with Mint 12 and gcc 4.6.1 And now understand the "short version" of yours. :-) Best Troels 2012/1/13 Thomas Holder > Hi Troels, > >

Re: [PyMOL] Rebuild/install of pymol after svn up ?

2012-01-13 Thread Thomas Holder
Hi Troels, you need to reinstall. After "svn up", run this again (not your big installation script, it does too much...): http://pymolwiki.org/index.php/Linux_Install#Compile_and_install Cheers, Thomas On 01/13/2012 12:34 PM, Troels Emtekær Linnet wrote: > Hi. > > I use the open-source PyMO

[PyMOL] Rebuild/install of pymol after svn up ?

2012-01-13 Thread Troels Emtekær Linnet
Hi. I use the open-source PyMOL with the svn repository. But I have a question. When I make a "svn up", do I then need to rebuild and install pymol again? Or is it fine just with the "svn up". Thanks. Best Troels -- RSA(

Re: [PyMOL] Rebuild

2010-06-29 Thread Jason Vertrees
Hi Mark, The surface representation of a protein, in PyMol, shows the "Connolly" surface or the surface that would be traced out by the _surfaces_ of waters in contact with the protein at all possible positions. Also, since PDBs don't have hydrogens, and PyMOL will calculate the surface for whate

[PyMOL] Rebuild

2010-06-28 Thread Mark A Saper
If a model is modified, the "rebuild" command does not always update the surface. For example, show lines, theProtein and not elem H show surface show lines, elem H rebuild The surface does not change. But if I now, hide surface show surface t