If a model is modified, the "rebuild" command does not always update the
surface. For example,
show lines, theProtein and not elem H
show surface
show lines, elem H
rebuild
The surface does not change. But if I now,
hide surface
show surface
the surface swells slightly to account for the hydrogens.
Is this a bug? or a feature? Also, is it appropriate to show surfaces in
publication in the presence of the H's? Or does the 1.4 Å probe sphere that
PyMOL uses intended to account for them?
Mark
_________________________________
Mark A. Saper, Ph.D.
Associate Professor of Biological Chemistry
University of Michigan
sa...@umich.edu phone (734) 764-3353 fax (734) 764-3323
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