Hi Daniel,
You say you used "split_states", so all your conformations have the same
topology (are the same molecule). In that case, I suggest to use cmd.rms
instead of cmd.align, which will be more efficient. You also don't need to
split the structures, but call the function with the correct "m
Hi!
I have a group of structures (168 in total) and I want to align all of them
to the first one in order to know the RMSD calculation. For that purpose I
use the following:
f=open('rmsd.txt','w')
rms2=cmd.align('structure_0002 and name ca','structure_0001 and name ca')
.
. (NOTE: I got all of th
