Hi!
I have a group of structures (168 in total) and I want to align all of them
to the first one in order to know the RMSD calculation. For that purpose I
use the following:
f=open('rmsd.txt','w')
rms2=cmd.align('structure_0002 and name ca','structure_0001 and name ca')
.
. (NOTE: I got all of these structures by the command split_states somename)
.
rms9=cmd.align('structure_0009 and name ca','structure_0001 and name ca')
How do I get the output with the *number* of each RMSD into the text
file rmsd.txt? What other way can I use to do so?
Thanks in advance,
D.
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