Re: [PyMOL] Optimize plugin throws "NameError: global name 'ob' is not defined"

2014-11-12 Thread Douglas Houston
Thanks Matt, that is indeed the problem: Python 2.5.1 (r251:54863, Sep 21 2007, 11:20:07) [GCC 3.2.3 20030502 (Red Hat Linux 3.2.3-56)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import openbabel Traceback (most recent call last): File "", line 1, in I

Re: [PyMOL] Optimize plugin throws "NameError: global name 'ob' is not defined"

2014-11-12 Thread Matthew Baumgartner
Hi, Can you check to see if the python bindings are compiled openbabel? On the bash command line, run the command 'python' to get an interactive shell and then run 'import openbabel'. Matt On 11/12/2014 07:14 AM, Douglas Houston wrote: > Hi all, > > I installed Optimize.py, now when I start Pym

[PyMOL] Optimize plugin throws "NameError: global name 'ob' is not defined"

2014-11-12 Thread Douglas Houston
Hi all, I installed Optimize.py, now when I start Pymol I see: "Optimize plug-in needs openbabel to be installed in your system, please follow the instructions at http://openbabel.org/wiki/Get_Open_Babel"; If I try to use any optimize commands I get: "PyMOL>minimize all, nsteps 2 Traceback (m