Hi, Can you check to see if the python bindings are compiled openbabel? On the bash command line, run the command 'python' to get an interactive shell and then run 'import openbabel'.
Matt On 11/12/2014 07:14 AM, Douglas Houston wrote: > Hi all, > > I installed Optimize.py, now when I start Pymol I see: > > "Optimize plug-in needs openbabel to be installed in your system, > please follow the instructions at > http://openbabel.org/wiki/Get_Open_Babel"; > > If I try to use any optimize commands I get: > > "PyMOL>minimize all, nsteps 2 > Traceback (most recent call last): > File > "/usr/people/douglas/programs/pymol-v1.7.2.3/modules/pymol/parser.py", > line 254, in parse > self.result=apply(layer.kw[0],layer.args,layer.kw_args) > File > "/usr/people/douglas/programs/pymol-v1.7.2.3/modules/pmg_tk/startup/optimize.py", > line 237, in > minimize > obconversion = ob.OBConversion() > NameError: global name 'ob' is not defined > " > > Open Babel IS installed on my system (v2.3.2), do I need to tell Pymol where? > > cheers, > Doug > > ------------------------------------------------------------------------------ Comprehensive Server Monitoring with Site24x7. Monitor 10 servers for $9/Month. Get alerted through email, SMS, voice calls or mobile push notifications. Take corrective actions from your mobile device. http://pubads.g.doubleclick.net/gampad/clk?id=154624111&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
