Hi Andreas,
dot_solvent=0 is solvent excluded surface, also known as molecular surface or
Connolly surface. PyMOL approximates it numerically by sampling points on the
surface
See: https://pymolwiki.org/index.php/Get_Area#Settings
Cheers,
Thomas
> On May 19, 2019, at 10:08 PM, Andreas Tosst
Hi all,
I am looking for the method by which the get_area command calculates the
molecular surface area when dot_solvent=0.
It is described for SASA in the mailing list but I could not find it for the
default method.
Thanks a lot for your help!
Andreas
__
hi
can anyone tell me, how can i caluclate the molecuar surface area for just
interacting protein -ligand structure, not for whole protein.?
when i do this
first i hide the protein non-interacting part then
by clicking A --> COMPUTE --> SURFACE--> MOLECULAR,
no surface area is generated
