On Mon, Sep 19, 2011 at 3:56 PM, Thomas Holder <
spel...@users.sourceforge.net> wrote:
> Hi Lina,
>
>
> Another question here,
>>
>> can I show the whole residue as a ball, and different residues connect by
>> (virtual) bonds.
>>
>
> combine ribbon and CA spheres:
>
> hide everything
> show ribbo
Hi Lina,
> Another question here,
>
> can I show the whole residue as a ball, and different residues connect
> by (virtual) bonds.
combine ribbon and CA spheres:
hide everything
show ribbon
show spheres, name CA
set sphere_scale, 0.5
set ribbon_width, 5
Cheers,
Thomas
--
Thomas Holder
MP
On Mon, Sep 19, 2011 at 12:41 PM, Jason Vertrees <
jason.vertr...@schrodinger.com> wrote:
> Hi Lina,
>
> First, download the one-letter and three-letter amino acid converters
> (http://www.pymolwiki.org/index.php/Aa_codes) and run it or copy/paste
> it into PyMOL. It's nice to have these in your ~
Hi Lina,
First, download the one-letter and three-letter amino acid converters
(http://www.pymolwiki.org/index.php/Aa_codes) and run it or copy/paste
it into PyMOL. It's nice to have these in your ~/.pymolrc. Then, try
something like this:
# fetch a protein
fetch 1rx1, async=0
# hide all
hide
Hi,
Is it possible to output the sequence roughly following the skeleton of protein
structure?
Or are there some other good way handling it.
I tried aline (seem this name) before and also manually. It's headache to
arrange large molecules.
Thanks for any suggestions.
Lina
