On Mon, Sep 19, 2011 at 12:41 PM, Jason Vertrees < [email protected]> wrote:
> Hi Lina, > > First, download the one-letter and three-letter amino acid converters > (http://www.pymolwiki.org/index.php/Aa_codes) and run it or copy/paste > it into PyMOL. It's nice to have these in your ~/.pymolrc. Then, try > something like this: > Hi Jason, Thanks for your answering. Another question here, can I show the whole residue as a ball, and different residues connect by (virtual) bonds. Just curious. Thanks again for your help, > > # fetch a protein > > fetch 1rx1, async=0 > > # hide all > > hide > > # show ball-and-stick for the main chain > > preset.ball_and_stick("n. C+O+N+CA") > > # hide the solvent > > hide everything, solvent > > # show the labels > > label vis, one_letter[resn] > > Cheers, > > -- Jason > > > On Sat, Sep 17, 2011 at 12:48 PM, lina <[email protected]> wrote: > > Hi, > > > > Is it possible to output the sequence roughly following the skeleton of > protein structure? > > > > Or are there some other good way handling it. > > > > I tried aline (seem this name) before and also manually. It's headache to > arrange large molecules. > > > > Thanks for any suggestions. > > > > Lina > > > ------------------------------------------------------------------------------ > > BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA > > http://p.sf.net/sfu/rim-devcon-copy2 > > _______________________________________________ > > PyMOL-users mailing list ([email protected]) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/[email protected] > > > > > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrodinger, LLC > > (e) [email protected] > (o) +1 (603) 374-7120 > -- Best Regards, lina
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