Re: [PyMOL] ContactsNCONT script error

2011-05-26 Thread Campeotto, Ivan
14:50 To: Campeotto, Ivan Cc: Tsjerk Wassenaar; pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] ContactsNCONT script error The webpage is now indented correctly. Oddly enough, it was only mis-indented for top-level lines (def, def, cmd.extend). Everything else was consistent. On Thu, May

Re: [PyMOL] ContactsNCONT script error

2011-05-26 Thread Michael Lerner
cript is now working. > > Thank you again, > > Ivan Campeotto > > > From: Tsjerk Wassenaar [tsje...@gmail.com] > Sent: 26 May 2011 07:18 > To: Michael Lerner > Cc: Campeotto, Ivan; pymol-users@lists.sourceforge.net > Subject:

Re: [PyMOL] ContactsNCONT script error

2011-05-26 Thread Campeotto, Ivan
@lists.sourceforge.net Subject: Re: [PyMOL] ContactsNCONT script error Hi, The first line is okay, but the rest seems to have an extra space, indeed. You can remove it from the script using: sed -i 's/^ //' script.py Hope it helps, Tsjerk On Thu, May 26, 2011 at 4:33 AM, Michael Lerner wrote:

Re: [PyMOL] ContactsNCONT script error

2011-05-25 Thread Tsjerk Wassenaar
Hi, The first line is okay, but the rest seems to have an extra space, indeed. You can remove it from the script using: sed -i 's/^ //' script.py Hope it helps, Tsjerk On Thu, May 26, 2011 at 4:33 AM, Michael Lerner wrote: > Hi Ivan, > There's definitely a bug in that script. It looks like mo

Re: [PyMOL] ContactsNCONT script error

2011-05-25 Thread Michael Lerner
Hi Ivan, There's definitely a bug in that script. It looks like most of the file has one extra space of indentation. I don't feel comfortable changing it at the moment, as I'm not on a machine that has ccp4, but perhaps someone else can fix and test it. If not, I'll fix it tomorrow. Cheers, -Mic

[PyMOL] ContactsNCONT script error

2011-05-25 Thread Campeotto, Ivan
Dear All, I would like to compare the intermolecular crystal contacts in seven crystal forms of the same enzyme. I produced a list of contacts for each crystal form using the program NCONT from CCP4 and I found the ContactsNCONT script in the PyMOL Wiki (http://www.pymolwiki.org/index.php/C