The webpage is now indented correctly.
Oddly enough, it was only mis-indented for top-level lines (def, def,
cmd.extend). Everything else was consistent.
On Thu, May 26, 2011 at 5:34 AM, Campeotto, Ivan <i.campeo...@imperial.ac.uk
> wrote:
> Dear Tsjerk and Michael,
>
> Thank you for your quick reply.
> The script is now working.
>
> Thank you again,
>
> Ivan Campeotto
>
> ________________________________________
> From: Tsjerk Wassenaar [tsje...@gmail.com]
> Sent: 26 May 2011 07:18
> To: Michael Lerner
> Cc: Campeotto, Ivan; pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] ContactsNCONT script error
>
> Hi,
>
> The first line is okay, but the rest seems to have an extra space,
> indeed. You can remove it from the script using:
>
> sed -i 's/^ //' script.py
>
> Hope it helps,
>
> Tsjerk
>
> On Thu, May 26, 2011 at 4:33 AM, Michael Lerner <mgler...@gmail.com>
> wrote:
> > Hi Ivan,
> > There's definitely a bug in that script. It looks like most of the file
> has
> > one extra space of indentation. I don't feel comfortable changing it at
> the
> > moment, as I'm not on a machine that has ccp4, but perhaps someone else
> can
> > fix and test it. If not, I'll fix it tomorrow.
> > Cheers,
> > -Michael
> > On Wed, May 25, 2011 at 7:35 PM, Campeotto, Ivan
> > <i.campeo...@imperial.ac.uk> wrote:
> >>
> >> Dear All,
> >>
> >>
> >> I would like to compare the intermolecular crystal contacts in seven
> >> crystal forms of the same enzyme.
> >> I produced a list of contacts for each crystal form using the program
> >> NCONT from CCP4 and I found the ContactsNCONT script in the PyMOL Wiki
> >> (http://www.pymolwiki.org/index.php/ContactsNCONT), which would save me
> a
> >> lot of time.
> >> Unfortunately, when I run the ContactsNCONT script, I always have the
> >> following message with different PCs running different OS (Windows,
> RedHat
> >> or Mac):
> >>
> >> File "C:\Program Files\DeLano Scientific\PyMOL/modules\pymol\parser.py",
> >> line 338, in parse
> >> parsing.run_file(path,self.pymol_names,self.pymol_names)
> >> File "C:\Program Files\DeLano
> Scientific\PyMOL/modules\pymol\parsing.py",
> >> line 455, in run_file
> >> execfile(file,global_ns,local_ns)
> >> File "C:/Documents and Settings/Ivan/Desktop/ContactsNCONT.py", line 3
> >> def parseContacts( f ):
> >> ^
> >> IndentationError: unexpected indent
> >>
> >>
> >> Any suggestion will be more than appreciated.
> >>
> >>
> >> Thank you in advance,
> >>
> >> Regards
> >>
> >> Ivan Campeotto
> >> Centre for Molecular Microbiology and Infection
> >> Imperial College London
> >>
> >>
> >>
> ------------------------------------------------------------------------------
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> >
> >
> >
> > --
> > Michael Lerner, Ph.D.
> > IRTA Postdoctoral Fellow
> > Laboratory of Computational Biology NIH/NHLBI
> > 5635 Fishers Lane, Room T909, MSC 9314
> > Rockville, MD 20852 (UPS/FedEx/Reality)
> > Bethesda MD 20892-9314 (USPS)
> >
> >
> ------------------------------------------------------------------------------
> > vRanger cuts backup time in half-while increasing security.
> > With the market-leading solution for virtual backup and recovery,
> > you get blazing-fast, flexible, and affordable data protection.
> > Download your free trial now.
> > http://p.sf.net/sfu/quest-d2dcopy1
> > _______________________________________________
> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
> >
>
>
>
> --
> Tsjerk A. Wassenaar, Ph.D.
>
> post-doctoral researcher
> Molecular Dynamics Group
> * Groningen Institute for Biomolecular Research and Biotechnology
> * Zernike Institute for Advanced Materials
> University of Groningen
> The Netherlands
>
--
Michael Lerner, Ph.D.
IRTA Postdoctoral Fellow
Laboratory of Computational Biology NIH/NHLBI
5635 Fishers Lane, Room T909, MSC 9314
Rockville, MD 20852 (UPS/FedEx/Reality)
Bethesda MD 20892-9314 (USPS)
------------------------------------------------------------------------------
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