, 2015 1:49 PM
To: H. Adam Steinberg
Cc: Markus Heller; pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Clip surface only
Hey :)
If you want to do it using only Pymol in just a few minutes, try this:
set auto_zoom, 0
scale=1.0
import numpy
M=numpy.array(cmd.get_view()).reshape(6,3
Hey :)
If you want to do it using only Pymol in just a few minutes, try this:
set auto_zoom, 0
scale=1.0
import numpy
M=numpy.array(cmd.get_view()).reshape(6,3)
cmd.pseudoatom("dummy",pos=list(M[4,:]-scale*numpy.dot(M[:3,:3],M[3,:])))
hide everything, (not ligand) within 150 of dummy
Adjust the
if you have access to Gimp or photoshop and want to do this in just a few
minutes… clip and render the surface how you want it, then without moving
anything, unclip and render just the ligand. In any bitmap editing program
layer the ligand image over the clipped surface image and merge the two i
Hello all,
I'm trying to show a ligand in a binding site, and I'd like to selectively clip
the surface only. I haven't found anything on the web, only that it was not
possible a few years ago.
Surely this has changed?
Thanks and Cheers
Markus
--
Markus Heller, Ph.D.
NMR Scientist
CDRD - Th
