Jason,
It was 0.99. I have re-checked using 1.2 and everything is displayed correctly.
Sorry about that.
Vitaly
- Original Message -
From: Jason Vertrees
Date: Thursday, September 9, 2010 8:57 am
Subject: Re: [PyMOL] CA trace
Cc: pymol-users@lists.sourceforge.net
> Vitaly,
>
Vitaly,
I just ran your example and I get two separate chains. What version
of PyMOL are you using?
Cheers,
-- Jason
On Thu, Sep 9, 2010 at 12:16 AM, Vitaly Vostrikov wrote:
> Hello,
>
> I would like to show a CA trace for each of the chains in a dimer. The
> "cartoon_trace" option works fin
Hello,
I would like to show a CA trace for each of the chains in a dimer. The
"cartoon_trace" option works fine for one chain, but then the cartoon continues
from the end of chain 1 to the beginning of chain 2. Is there a nicer way? Here
is what I use now:
#pdb file contains only CA atoms
fetc
Thank you Warren,
That exactly is what I wanted.
___
Vaheh
From: Warren DeLano [mailto:war...@delsci.com]
Sent: Wednesday, March 04, 2009 8:45 PM
To: Oganesyan, Vaheh; pymol-users@lists.sourceforge.net
Subject: RE: [PyMOL] Ca trace
Vaheh
]
Sent: Wednesday, March 04, 2009 2:46 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Ca trace
Colleagues,
If the PDB file contains only Ca atoms and PyMOL shows them as
non-bonded atoms what one should do to display them as a ribbon? The
1rh2 entry is one of them.
Thank you
Colleagues,
If the PDB file contains only Ca atoms and PyMOL shows them as
non-bonded atoms what one should do to display them as a ribbon? The
1rh2 entry is one of them.
Thank you.
___
Vaheh
To the extent this electronic communication or any of its attachments contain
inform
10:30 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] ca trace
>
> Hello:
>
> I think this was asked before but the list archives are down:
>
> If I have a pdb of Ca's only, is there a way to trace through them
without
> iteratively bonding them all (change a
Hello:
I think this was asked before but the list archives are down:
If I have a pdb of Ca's only, is there a way to trace through them without
iteratively bonding them all (change allowed bond distance??)
Can the tube cartoon recognize this? If I bond all the Ca together
iteratively, the carto
I know something similar has been answered earlier, but I can not find it.
How do I display CA trace of a molecule, if I only have CA-coordinates?
-- Bjorn
But that's what you should get, since alpha carbons aren't bonded
directly to other alpha carbons, right? Perhaps what you really want
to do is draw the protein "backbone only"? Try this:
hide all
show (name ca,c,n,o)
Cheers,
Ben
"Frank Vondelft" writes:
> Hidy Pymollers
>
> I *think*
.vonde...@syrrx.com]
> Sent: Tuesday, October 30, 2001 3:03 PM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] ca-trace
>
>
> Hidy Pymollers
>
> I *think* I've RTFMed everywhere I can, but I haven't been able to
> figure out how to draw a molecule C-alp
Hidy Pymollers
I *think* I've RTFMed everywhere I can, but I haven't been able to
figure out how to draw a molecule C-alpha only. When I selected all CA
atoms, I got a cloud of dots that were not connected. I suspect I've
missed something fundamental...
Thanks for any tips
Phraenquex
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