Re: [PyMOL] Beginning with PyMol

2015-04-22 Thread Rajib&Susmita Bandopadhyay
Dear Dr. Holder, Yes, we have downloaded, unpacked and checked. We can build molecules. Thank you. Regards, Rajib & Yuktimmana On 04/22/2015 09:43 AM, Rajib/Susmita Bandopadhyay wrote: > Dear Dr. Holder, > Thank you for responding to our emails. > The problem is that we use Knoppix Live Image for

Re: [PyMOL] Beginning with PyMol

2015-04-21 Thread Rajib/Susmita Bandopadhyay
Dear Dr. Holder, Thank you for responding to our emails. The problem is that we use Knoppix Live Image for all our daily computing and experimentation. Some packages of Debian don't seem to work on Knoppix (which is a blend of Stable, Unstable and Experimental). Yes, we wish to use PyMol for educat

Re: [PyMOL] Beginning with PyMol

2015-04-21 Thread Thomas Holder
Hi Rajib & Yuktimmana, If you're using PyMOL for education (that's what I guess since you want to learn about molecules), then you are eligible to download a self-sustaining package from http://pymol.org/edu/ However, PyMOL 1.5.0.1 on Debian 7.7 works fine for me to build molecules. Cheers,

Re: [PyMOL] Beginning with PyMol

2015-04-20 Thread Rajib/Susmita Bandopadhyay
Dear Prof. Holder, Surprisingly, I had tried the very step you stated but failed to run the program! Our discussion leads me to a conjecture that the Debian PyMol package is perhaps broken. I will do an extensive testing and be back with information. Is there a self-sustaining package in your websi

Re: [PyMOL] Beginning with PyMol

2015-04-20 Thread Thomas Holder
Hi Rajib & Yuktimmana, start like this: 1) click "CH4" 2) on the right side of the window click "Create As New Object" 3) now you can start replacing elements or attaching more fragments. Hope that works. Cheers, Thomas On 19 Apr 2015, at 14:12, Rajib/Susmita Bandopadhyay wrote: > Dear Pr

Re: [PyMOL] Beginning with PyMol

2015-04-19 Thread H. Adam Steinberg
I’ve always wonder why this isn’t available on the Mac version. > On Apr 19, 2015, at 8:58 AM, Thomas Holder > wrote: > > Hi Rajib & Yuktimmana, > > you can interactively build molecules using the builder: > http://pymolwiki.org/index.php/Builder > > Enjoy! > > Cheers, > Thomas > > On 19

Re: [PyMOL] Beginning with PyMol

2015-04-19 Thread Thomas Holder
Hi Rajib & Yuktimmana, you can interactively build molecules using the builder: http://pymolwiki.org/index.php/Builder Enjoy! Cheers, Thomas On 19 Apr 2015, at 08:03, bkpsusmitaa wrote: > Dear Sir / Madam, > My daughter and I are novices in PyMol. We have only just begun! :) I > have seen th

[PyMOL] Beginning with PyMol

2015-04-19 Thread bkpsusmitaa
Dear Sir / Madam, My daughter and I are novices in PyMol. We have only just begun! :) I have seen the page http://www.pymolwiki.org/index.php/Practical_Pymol_for_Beginners. Begins with a protein molecule. We use the PyMol package from the Debian Repository in a Knoppix system. How can we begin by b