Dear Dr. Holder,
Yes, we have downloaded, unpacked and checked. We can build molecules.
Thank you.
Regards,
Rajib & Yuktimmana

On 04/22/2015 09:43 AM, Rajib/Susmita Bandopadhyay wrote:
> Dear Dr. Holder,
> Thank you for responding to our emails.
> The problem is that we use Knoppix Live Image for all our daily
> computing and experimentation. Some packages of Debian don't seem to
> work on Knoppix (which is a blend of Stable, Unstable and Experimental).
> Yes, we wish to use PyMol for education. We will download the package
> from the link, check and report back.
> Regards,
> Rajib & Yuktimmana
>
>
> On 04/22/2015 03:23 AM, Thomas Holder wrote:
>> Hi Rajib & Yuktimmana,
>>
>> If you're using PyMOL for education (that's what I guess since you want to 
>> learn about molecules), then you are eligible to download a self-sustaining 
>> package from http://pymol.org/edu/
>>
>> However, PyMOL 1.5.0.1 on Debian 7.7 works fine for me to build molecules.
>>
>> Cheers,
>>   Thomas
>>
>> PS: I'm not a professor
>>
>>
>> On 20 Apr 2015, at 15:07, Rajib/Susmita Bandopadhyay <bkpsusmi...@gmail.com> 
>> wrote:
>>
>>> Dear Prof. Holder,
>>> Surprisingly, I had tried the very step you stated but failed to run the
>>> program!
>>> Our discussion leads me to a conjecture that the Debian PyMol package is
>>> perhaps broken.
>>> I will do an extensive testing and be back with information.
>>> Is there a self-sustaining package in your website that can run on its
>>> own, just like Geogebra independent package?
>>> Regards,
>>> Rajib & Yuktimmana
>>>
>>> On 04/20/2015 06:48 PM, Thomas Holder wrote:
>>>> Hi Rajib & Yuktimmana,
>>>>
>>>> start like this:
>>>>
>>>> 1) click "CH4"
>>>> 2) on the right side of the window click "Create As New Object"
>>>> 3) now you can start replacing elements or attaching more fragments.
>>>>
>>>> Hope that works.
>>>>
>>>> Cheers,
>>>>  Thomas
>>>>
>>>> On 19 Apr 2015, at 14:12, Rajib/Susmita Bandopadhyay 
>>>> <bkpsusmi...@gmail.com> wrote:
>>>>
>>>>> Dear Professor,
>>>>>
>>>>> We had tried. When I clicked the carbon link, it says, "select the atoms 
>>>>> to replace with carbon"
>>>>>
>>>>> When I clicked on CH4 it says, "Pick locations to attach methyl".
>>>>>
>>>>> This goes on for others as well.
>>>>>
>>>>> That is supposed to mean I can't build a molecule from scratch! I am 
>>>>> using the version 1.5.0.1, available from the Debian Repository.
>>>>>
>>>>> My UI appears as the one immediately below, while the website has the one 
>>>>> at the bottom.
>>>>>
>>>>> When I click on the drop-down menu Build the program shows: Fragment, 
>>>>> Residue, Sculpting, etc., but not single atom or single molecule.
>>>>>
>>>>> <Mail Attachment.png>
>>>>> The one below is on the website.
>>>>>
>>>>> <Mail Attachment.png>
>>>>>
>>>>> The first step is always the toughest one, we know. Please get us moving. 
>>>>> Give me some concrete steps - click, then do this, then this, ... to 
>>>>> build one molecule from scratch.
>>>>> Regards,
>>>>> Rajib & Yuktimmana
>>>>>
>>>>> On 04/19/2015 07:28 PM, Thomas Holder wrote:
>>>>>> Hi Rajib & Yuktimmana,
>>>>>>
>>>>>> you can interactively build molecules using the builder:
>>>>>>
>>>>>> http://pymolwiki.org/index.php/Builder
>>>>>>
>>>>>>
>>>>>> Enjoy!
>>>>>>
>>>>>> Cheers,
>>>>>>  Thomas
>>>>>>
>>>>>> On 19 Apr 2015, at 08:03, bkpsusmitaa 
>>>>>> <bkpsusmi...@gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>>> Dear Sir / Madam,
>>>>>>> My daughter and I are novices in PyMol. We have only just begun! :) I
>>>>>>> have seen the page
>>>>>>>
>>>>>>> http://www.pymolwiki.org/index.php/Practical_Pymol_for_Beginners
>>>>>>> .
>>>>>>> Begins with a protein molecule.
>>>>>>> We use the PyMol package from the Debian Repository in a Knoppix system.
>>>>>>> How can we begin by building a simple molecule, say, methane, or
>>>>>>> carbon tetrachloride, or butylene?
>>>>>>> Eagerly awaiting your reply,
>>>>>>> Rajib & Yuktimmana


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