Dear Dr. Holder, Yes, we have downloaded, unpacked and checked. We can build molecules. Thank you. Regards, Rajib & Yuktimmana
On 04/22/2015 09:43 AM, Rajib/Susmita Bandopadhyay wrote: > Dear Dr. Holder, > Thank you for responding to our emails. > The problem is that we use Knoppix Live Image for all our daily > computing and experimentation. Some packages of Debian don't seem to > work on Knoppix (which is a blend of Stable, Unstable and Experimental). > Yes, we wish to use PyMol for education. We will download the package > from the link, check and report back. > Regards, > Rajib & Yuktimmana > > > On 04/22/2015 03:23 AM, Thomas Holder wrote: >> Hi Rajib & Yuktimmana, >> >> If you're using PyMOL for education (that's what I guess since you want to >> learn about molecules), then you are eligible to download a self-sustaining >> package from http://pymol.org/edu/ >> >> However, PyMOL 1.5.0.1 on Debian 7.7 works fine for me to build molecules. >> >> Cheers, >> Thomas >> >> PS: I'm not a professor >> >> >> On 20 Apr 2015, at 15:07, Rajib/Susmita Bandopadhyay <bkpsusmi...@gmail.com> >> wrote: >> >>> Dear Prof. Holder, >>> Surprisingly, I had tried the very step you stated but failed to run the >>> program! >>> Our discussion leads me to a conjecture that the Debian PyMol package is >>> perhaps broken. >>> I will do an extensive testing and be back with information. >>> Is there a self-sustaining package in your website that can run on its >>> own, just like Geogebra independent package? >>> Regards, >>> Rajib & Yuktimmana >>> >>> On 04/20/2015 06:48 PM, Thomas Holder wrote: >>>> Hi Rajib & Yuktimmana, >>>> >>>> start like this: >>>> >>>> 1) click "CH4" >>>> 2) on the right side of the window click "Create As New Object" >>>> 3) now you can start replacing elements or attaching more fragments. >>>> >>>> Hope that works. >>>> >>>> Cheers, >>>> Thomas >>>> >>>> On 19 Apr 2015, at 14:12, Rajib/Susmita Bandopadhyay >>>> <bkpsusmi...@gmail.com> wrote: >>>> >>>>> Dear Professor, >>>>> >>>>> We had tried. When I clicked the carbon link, it says, "select the atoms >>>>> to replace with carbon" >>>>> >>>>> When I clicked on CH4 it says, "Pick locations to attach methyl". >>>>> >>>>> This goes on for others as well. >>>>> >>>>> That is supposed to mean I can't build a molecule from scratch! I am >>>>> using the version 1.5.0.1, available from the Debian Repository. >>>>> >>>>> My UI appears as the one immediately below, while the website has the one >>>>> at the bottom. >>>>> >>>>> When I click on the drop-down menu Build the program shows: Fragment, >>>>> Residue, Sculpting, etc., but not single atom or single molecule. >>>>> >>>>> <Mail Attachment.png> >>>>> The one below is on the website. >>>>> >>>>> <Mail Attachment.png> >>>>> >>>>> The first step is always the toughest one, we know. Please get us moving. >>>>> Give me some concrete steps - click, then do this, then this, ... to >>>>> build one molecule from scratch. >>>>> Regards, >>>>> Rajib & Yuktimmana >>>>> >>>>> On 04/19/2015 07:28 PM, Thomas Holder wrote: >>>>>> Hi Rajib & Yuktimmana, >>>>>> >>>>>> you can interactively build molecules using the builder: >>>>>> >>>>>> http://pymolwiki.org/index.php/Builder >>>>>> >>>>>> >>>>>> Enjoy! >>>>>> >>>>>> Cheers, >>>>>> Thomas >>>>>> >>>>>> On 19 Apr 2015, at 08:03, bkpsusmitaa >>>>>> <bkpsusmi...@gmail.com> >>>>>> wrote: >>>>>> >>>>>>> Dear Sir / Madam, >>>>>>> My daughter and I are novices in PyMol. We have only just begun! :) I >>>>>>> have seen the page >>>>>>> >>>>>>> http://www.pymolwiki.org/index.php/Practical_Pymol_for_Beginners >>>>>>> . >>>>>>> Begins with a protein molecule. >>>>>>> We use the PyMol package from the Debian Repository in a Knoppix system. >>>>>>> How can we begin by building a simple molecule, say, methane, or >>>>>>> carbon tetrachloride, or butylene? >>>>>>> Eagerly awaiting your reply, >>>>>>> Rajib & Yuktimmana ------------------------------------------------------------------------------ BPM Camp - Free Virtual Workshop May 6th at 10am PDT/1PM EDT Develop your own process in accordance with the BPMN 2 standard Learn Process modeling best practices with Bonita BPM through live exercises http://www.bonitasoft.com/be-part-of-it/events/bpm-camp-virtual- event?utm_ source=Sourceforge_BPM_Camp_5_6_15&utm_medium=email&utm_campaign=VA_SF _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
