Hello PyMOL users,
Where can I find the coloring scale used for B-factor in PyMOL?
Many thanks,
Neena
___
PyMOL-users mailing list
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Unsubscribe:
https://sourceforge.net/projects/pym
Hi Kingsley,
The b-factor is a result of the X-ray crystallography experiment. If you have
X-ray data, I suggest to consult the CCP4BB mailing list
(http://www.ccp4.ac.uk/ccp4bb.php). If you don’t have such data, then you can’t
calculate a b-factor.
There are computational methods which analyz
Hi everyone !
I want to calculate the b-factor for my protein . Can. Anyone tell me how
to do b-factor or some tutorial about that.
Thanks in advance :)
--
Check out the vibrant tech community on one of the world's most
en
Hi Thomas,
On Tue, 09 Mar 2010 10:29:17 +0100 Thomas Holder
wrote:
> Hi Simon and Robert,
>
> > It sounds like the file as it is read by the script is completely on one
> > line. I wonder if this is the old UNIX vs MSDOS line ending problem.
>
> yes, sounds like a linefeed problem. But actuall
Hi Simon and Robert,
> It sounds like the file as it is read by the script is completely on one
> line. I wonder if this is the old UNIX vs MSDOS line ending problem.
yes, sounds like a linefeed problem. But actually python has universal
newline support. I made some changes to the script (quite a
Hi Simon,
On Mon, 08 Mar 2010 18:09:31 +0100 Simon Lindhoud
wrote:
> Dear all,
>
> Unfortunately I'm not really familiar with programming in Python (yet) but
> I've encountered a problem with MacPyMol in running the script that can be
> found here:
> http://cavanagh-lab.bch.ncsu.edu/bobay/intr
Dear all,
Unfortunately I'm not really familiar with programming in Python (yet) but
I've encountered a problem with MacPyMol in running the script that can be
found here:
http://cavanagh-lab.bch.ncsu.edu/bobay/intranet/pymol/data2bfactor.py
I've tried a couple of things to get the script runnin
Scientific LLC
Subscriber Support Services
mailto:supp...@delsci.com
_
From: Mark A. White [mailto:mawh...@utmb.edu]
Sent: Monday, December 15, 2008 3:34 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] B-factor putty tube representation
Hi,
I would like to define the radius of the
Hi,
I would like to define the radius of the cartoon putty on absolute,
rather than a relative scale. Is there any way to do this? If I am
comparing rmsd, for example, I would like every image to be
representative of the true RMSD differences, rather than being a unique
relative scale for each c
I have used to the color by B-factor setting to look at some interesting
differences between two structures. Is there a way in Pymol to get a
scale bar at the side showing colors from high to low and a quantitative
axis? If not, is there a way of getting a list of the RGB or CMYK codes
for each
n
Carlisle
Sent: Sunday, July 23, 2006 8:15 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] B-factor colours
Can someone please tell me either a) what the scale is for B-factor
colouring as it comes with Pymol, or b) how to find out?
Bronwyn Carlisle
Room 231
Biochemistry Department
Can someone please tell me either a) what the scale is for B-factor
colouring as it comes with Pymol, or b) how to find out?
Bronwyn Carlisle
Room 231
Biochemistry Department
University of Otago
PO Box 56
710 Cumberland St
Dunedin
email: bronwyn.carli...@stonebow.otago.ac.nz
tel: +64 (0)3 479
lto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> Ed Czerwinski
> Sent: Monday, May 02, 2005 11:53 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] b-factor colors
>
> Is it possible to modify the range of color us
Is it possible to modify the range of color used for showing b-factors?
**
Edmund W. Czerwinski, Ph.D.
Associate Professor
Sealy Center for Structural Biology
Dept. of Human Biological Chemistry & Genetics
The University of Texas Medical Branch
14 matches
Mail list logo
