Re: [PyMOL] Aligning states one at a time

2012-07-09 Thread Jason Vertrees
Hi Jordan, Regarding your post script, > PS. In the newest release of pymol for mac, I have noticed that when I click > on a letter in the sequence (when the s option is toggled) it selects the > entire chain rather than the individual amino acid. Your mouse selecting mode is "chains". Click o

Re: [PyMOL] Aligning states one at a time

2012-07-09 Thread Thomas Holder
Hi Jordan, you can first intra_fit the multi-state object and then align its first state to the input structure. # this will fit all states to the first state intra_fit multimodel # align first state to input structure align multimodel, input, mobile_state=1 http://pymolwiki.org/index.php/intr

[PyMOL] Aligning states one at a time

2012-07-08 Thread Jordan Willis
Hi Pymol! I have a question about movies, but has nothing to do with the movie commands, so don't worry. I have 750 states that are dumped directly into pymol where each "move" from my modeling program, is a new state. I want to compare this to the input structure which only has one state. I