Hi Pymol!
I have a question about movies, but has nothing to do with the movie commands,
so don't worry.
I have 750 states that are dumped directly into pymol where each "move" from
my modeling program, is a new state. I want to compare this to the input
structure which only has one state.
If I align the 750 states to the 1 input, it sort of gives me a "global" fit
that seems to be a consensus among all 750 states. What I would like however is
each state to be aligned to my input structure separately. Then when I hit play
I won't see such huge moves away from the input and a bad alignment.
My plan was to write a script that can do one of the following:
Make 750 states of the input structure even though they all will be the
same and align state1 from the output to state 1 to the input.
or:
split all out to a separate object, align each one separately then zip
up all the objects into one state.
Usually when I do this, there turns out to be some command that can do this for
me. Does anyone know of an easier way of doing this? Or perhaps have some tips
for me in my scripts? For instance, is their a command that can add a bunch of
states back together?
Thanks so much,
Jordan
PS. In the newest release of pymol for mac, I have noticed that when I click on
a letter in the sequence (when the s option is toggled) it selects the entire
chain rather than the individual amino acid.
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