Re: [PyMOL] Pymol APBS plugin error

2019-12-02 Thread Jack Howarth
Also, keep in mind that pdb2pqr isn't python3 friendly so you will have to use an externally generated pqr file. The current mechanism for calling pdb2pqr from within the APBS Tool results in pdb2pqr running under the same python as pymol. Jack On Mon, Dec 2, 2019 at 5:58 PM Jack Howarth

Re: [PyMOL] Pymol APBS plugin error

2019-12-02 Thread Jack Howarth
You need more patches in your installed Pmw 2.0.0. On MacPorts, we use... https://github.com/macports/macports-ports/blob/master/python/py-pmw/files/patch-pmw2-py36.diff and https://github.com/macports/macports-ports/blob/master/python/py-pmw/files/patch-pmw2.diff applied over Pmw_2_0_0. Jack

[PyMOL] Pymol APBS plugin error

2019-12-02 Thread RDirective
Dear all, I get the following errors when trying to launch the APBS plugin from the plugins menu Traceback (most recent call last): File "/home/quyen/Pymol/install/lib64/python/pmg_tk/startup/apbs_tools.py", line 322, in command = lambda s=self: APBSTools2(s)) File "/home/quyen/Pymol/i

[PyMOL] APBS plugin error

2008-03-06 Thread Ben Eisenbraun
Hi, One of our researchers is trying to build an electrostatic map of his model using the APBS plugin and is generating the following error. This is Pymol 1.0r2 on Linux with APBS 0.5.1. Any suggestions on how to fix it would be appreciated. Error: 11 CmdException Exception in Tk callback Fu