Re: [PyMOL] Pymol 64-bits MacOSX

On 09.04.2010, at 17:22, Lucas Santos wrote: > not an issue I am running pymol on a MacPro with 16 Gb of RAM and running > leopard. I searched over the internet but I could not find a 64-bit version > for MacOSX. Is there a 64-bit macpymol available? If not is it possible to > compile a 64-bit

Re: [PyMOL] Will Pymol participate in Google Summer of Code 2008?

. -- - Konrad Hinsen Centre de Biophysique Moléculaire, CNRS Orléans Synchrotron Soleil - Division Expériences Saint Aubin - BP 48 91192 Gif sur Yvette Cedex, France Tel. +33-1 69 35 97 15 E-Mail: hin...@cnrs-orleans.fr -

Re: [PyMOL] Non-orthogonal maps from Python code

#x27;t say how the data must be arranged in the various arrays and data structures). For DSN6, I didn't find anything at all. Konrad. -- ----- Konrad Hinsen Centre de Biophysique Moléculaire, CNRS Orléans Synchrotron So

[PyMOL] Non-orthogonal maps from Python code

e non-orthgonal maps? Konrad. -- - Konrad Hinsen Centre de Biophysique Moléculaire, CNRS Orléans Synchrotron Soleil - Division Expériences Saint Aubin - BP 48 91192 Gif sur Yvette Cedex, France Tel. +33-1 69 35 97 15 E-Mail: hin...

[PyMOL] PyMol with MacOS 10.4

Are there other people out there who compile their own PyMol on the Mac and who have succeeded with MacOS 10.4 (Tiger)? After updating my Mac to Tiger, my PyMol installation doesn't work anymore: ~> pymol Traceback (most recent call last): File "/usr/local/lib/pymol/modules/pymol/__init__

Re: [PyMOL] Pymol on MacMini: performances

ple vendor! Konrad. -- ----- Konrad Hinsen Laboratoire Léon Brillouin, CEA Saclay, 91191 Gif-sur-Yvette Cedex, France Tel.: +33-1 69 08 79 25 Fax: +33-1 69 08 82 61 E-Mail: khin...@cea.fr -

Re: [PyMOL] keynote

vert PyMol movies to QuickTime format, which is very well supported in Keynote. Konrad. -- ---- --- Konrad Hinsen Laboratoire Leon Brillouin, CEA Saclay, 91191 Gif-sur-Yvette Cedex, France Tel.: +33-1 69 08 79 25 Fax: +33-1 69 0

Re: [PyMOL] Reading external grid files

On Mar 23, 2005, at 14:14, Antonio Morreale wrote: I'm new to pymol, and maybe the question is very basic, but I hope to have your help. I would like to read grids files generated by in house program, how can I do this within pymol? If the data is defined on an equidistant grid, and if you can

Re: [PyMOL] Translating and rotating

iginal selection. No problem in my case, I want to move all atoms anyway, relative to an electron density map. But I don't see how I can move the atoms at all using the mouse - all I change is the camera view. Konrad. -- ----- Ko

Re: [PyMOL] molecular Mechanics calculations

with PyMOL interface that I recently announced here to write PyMOL scripts and plugins that calculate energies and do other molecular mechanics operations. Konrad. -- - Konrad Hinsen Laboratoire Léon Brillouin, CEA Saclay, 91191

Re: [PyMOL] using package Scientific from within pymol on OS X-X11 hybrid

hat way, I have all my python packages available for PyMOL scripts. In fact, I had almost forgotten that I still had the X11 hybrid on my machine. Konrad. -- - Konrad Hinsen Laboratoire Léon Brillouin, CEA Saclay, 911

[PyMOL] MMTK 2.5.1 with PyMOL support

, trajectory_plugin.py, loads MMTK trajectories into PyMOL for visualization. As always, feedback is welcome! -- - Konrad Hinsen Laboratoire Léon Brillouin, CEA Saclay, 91191 Gif-sur-Yvette Cedex, France Tel.: +33-1 69 08 79 25 Fax: +33-1 69

Re: [PyMOL] Electronic density maps

On Jun 22, 2004, at 19:29, Konrad Hinsen wrote: So now I am trying chempy.brick. I just installed NumPy into the internal Python (business as usual). However, while I can generate bricks, any isomesh I make from After recompiling PyMOL, it works fine. Who needs weird file formats when one

Re: [PyMOL] Electronic density maps

the example script (brick01.py), which generates eight meshes that are all empty. Is this a bug? Konrad. -- - Konrad Hinsen Laboratoire Léon Brillouin, CEA Saclay, 91191 Gif-sur-Yvette Cedex, France Tel.: +33-1 69 08 79 25 Fax

Re: [PyMOL] Electronic density maps

On Jun 22, 2004, at 11:41, Konrad Hinsen wrote: I'll see if I can get CCP4 format to work in a reasonable amount of time... Actually I went for XPlor in the end, after getting a useful hint: http://cns.csb.yale.edu/v1.1/tutorial/text.html Problem: the XPlor format does not sp

Re: [PyMOL] Electronic density maps

On Jun 21, 2004, at 17:36, Warren DeLano wrote: Konrad, There are several options for loading map data into PyMOL now: XPLOR (format=xplor) CCP4 (format=ccpy) O/BRIX (format=brix) Good to know! At least the CCP4 one is documented, but being a binary format, it's a bit of a pain to use. Y

[PyMOL] Electronic density maps

. Konrad. -- - Konrad Hinsen Laboratoire Léon Brillouin, CEA Saclay, 91191 Gif-sur-Yvette Cedex, France Tel.: +33-1 69 08 79 25 Fax: +33-1 69 08 82 61 E-Mail: hin...@llb.saclay.cea.fr -

Re: [MMTK] Re: [PyMOL] improving interoperability between python moleculetoolkits (fwd)

from small research groups who do programming as a side job next to their research. Konrad. -- --- Konrad Hinsen| E-Mail: hin...@cnrs-orleans.fr Centre de Biophysique Moleculaire (CNRS) | Tel.: +33-2.38.25.56.24 Rue Charles Sadron | Fax: +3

Re: [Pyquante-users] Re: [MMTK] [PyMOL] improving interoperability between python molecule toolkits (fwd)

http://www.tddft.org/mailman/listinfo/fsatom Konrad. -- --- Konrad Hinsen| E-Mail: hin...@cnrs-orleans.fr Centre de Biophysique Moleculaire (CNRS) | Tel.: +33-2.38.25.56.24 Rue Charl

Re: [MMTK] [PyMOL] improving interoperability between python molecule toolkits (fwd)

. BTW, common file formats are another goal of the FSAtom organization. Konrad. -- ------- Konrad Hinsen| E-Mail: hin...@cnrs-orleans.fr Centre de Biophysique Moleculaire (CNRS) | Tel.: +33-2.38.25.56.24

Re: [MMTK] Re: [PyMOL] improving interoperability between python moleculetoolkits (fwd)

ults in spite of an enormous effort. Moreover, which scientist can afford to participate in their meetings? That's a full-time job. Konrad. -- --- Konrad Hinsen| E-Mail: hin...@cnrs-orleans

Re: [MMTK] [PyMOL] improving interoperability between python molecule toolkits (fwd)

tibility layer to keep old client code working. It won't happen overnight. > The question is whether the will exists to do this? Many of the toolkits On my side, yes. Konrad. -- --- Konrad Hinsen