[PyMOL] Pymol slow on a mac G4 with os 10.1

2002-08-23 Thread Russell Poyner
installation is not benefitting from the graphics hardware despite claims of full acceleration in the xserver. If there is a trick here that I am missing please let me know. Thanks Russell Poyner

Re: [PyMOL] Secondary structure assignments

2002-07-29 Thread Russell Poyner
protein's ss?). Thanks Russell Poyner I've been fiddling with this for my own work; I wrote a parser in Perl to embed structural annotation in a PDB file based on output from DSSP, STRIDE, or RasMol. Unfortunately it doesn't handle multiple chains yet, but I'm worki

[PyMOL] Cartoon representation of 310 helices, pi helicies, and H-bonded turns?

2002-07-26 Thread Russell Poyner
for these and call it good? Does anyone do anything special for H-bonded turns? Or perhaps protein cartoons are just a matter of personal taste? Thanks Russell Poyner

[PyMOL] trouble making movie on linux

2002-07-18 Thread Russell Poyner
x. I have though about adding CONNECT records to the pdb files to force proper bonding, or perhaps I can use babel to put them into some other format that will work. Thanks in Advance Russell Poyner