Hi Vivian,
I'm not sure if I fully understand your question, but if you want to
have a picture without shadows, by using "set light_count, 0"
(https://pymolwiki.org/index.php/Light_count) you should be able to
achieve this.
Rui
Le 22/02/2017 17:46, Vivien Schoonenberg a écrit :
Hi,
I’m r
Hi,
I am assuming it is because, when you pass the arguments on the
cmd.dihedral() command, the "obj" is being read as a string, instead of
the variable obj. I think your problem will be solved if you use
something like, for your first example:
"/"+obj+"///655/CA"
Note the quotation marks pla
Hi Marko,
For the order of the atoms, check if "retain_order" is set to 1; if not,
use "set retain_order, 1" before importing your PDB file. For the rest
of your problem, what exactly is being changed from the imported PDB
file and the saved one? Apart from the addition of TER, which is a
fair
so that the
vector is relative to the model's axes instead.
Le 25/11/2016 12:37, Rui Sousa a écrit :
Hello Sajeewa,
The translate command uses angström as a unit. Therefore, if you want
to translate obj2 by 10 nm, you should use "translate [100,0,0]"
instead of "translat
Hello Sajeewa,
The translate command uses angström as a unit. Therefore, if you want to
translate obj2 by 10 nm, you should use "translate [100,0,0]" instead of
"translate [10,0,0]".
Best regards,
Rui
Le 25/11/2016 12:04, Sajeewa Pemasinghe a écrit :
Hello everyone,
I have a linear molecu
Dear all,
I am trying to open a large trajectory file from a NAMD MD simulation on
a Windows machine running Pymol 1.7.2..
In order to do this, I tried two things (both with defer_builds_mode 3):
- Opening the .dcd file using load_traj, I was able to load most of it
(400 frames); however, if
